BAC Information

Click to search

BAC

Clone NameMSMg01-430N08
Chromosome5 (Build37)
Map Location 114,855,895 - 114,856,132
singlet/doubletsinglet
Overlap geneUbe3b
Upstream geneC530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10
Downstream geneMmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430N08.T7 (MSMg01no430_n08.b1)MSMg01-430N08.TJ (MSMg01no430_n08.g1)
ACCAG523233AG523234
length800793
length of high quality
(start - end)
239 (78 - 316)97 (82 - 178)
definitionCHROMAT_FILE: MSMg01no430_n08.b1 PHD_FILE: MSMg01no430_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:53 2005CHROMAT_FILE: MSMg01no430_n08.g1 PHD_FILE: MSMg01no430_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTGGTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGAT
CCGCGGAATTCTCCATTTTCCCAGAAAAAATGAGACCTCACTGACTTCTA
GACAAATGGGAGAATAGCATGCTAGCTTTTCTAGACACCTCCTGCACGGC
CTGGAGACGAAACGTATGGTGTCTAAGGTCTGCCTTGGAGTTATGCTGGG
GCAGGGGAGCTCCTGGGGTTTAAAGGAAGCAAGTAAGGCCGTGAGCTGGC
GACACACCTGAGGGGCTCTACAATCGTCCTCCCTTCTGTTTACTCGAAAC
TGTTCCCAGTGGGAAGATAGAAAATTTCTGGGAAAACAGTGAGGTCTGCT
CAGGCTTTCCCCAGTGAGCTGCCTGAGGTGCACGGCCGCCAGGATTGATA
ACCTGAGTCAGTCGCTGCTTACTGAGGAGCATGCGTCGTGGAGCTGTTTT
CCACGTCTATGCTAGACCAATGTCTCTTGTTCCCCGTTTTTATCCCCCGT
TTTTCCGTTTTATCCTCTTATCCTTATTCCCCCCGTCCATCTTTATCCTT
TTTCCTTCTCCCTCTCCTCTTTTCCTTTCTCCTTACCCATTTTTTTTTTT
TTCATTTTTTTCTCTTTTATCTCCTCTTCCCCTCCTCCCTTCCTCTTCTC
TCCCTTGTCCTCATCCTTTTTTCTTCTATTTAATATTTTTCTCGTTTTTT
TATTTCTTTTTTCCTGTCCATTTCCTCTTTACTCTCTCTTTTTTCCCTTT
TACTCTTCCTTTTCCTTATTCTTTTTTTCTCTTTTCCCTTGCTTCTTTTA

NNTTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCCAACCAAAGCTCCCT
ACGACCCCAGGTGGATGCTTGCAGGCAGGCCTCACCCAAGTAAGTCCCTA
AGTTTGTTCCCGGGGGGGGGGGGAAGTNTTNNNTNNNNNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTNNTTTTTTTTT
TTTTTTTTNTTTTTTCTTTTTNNNNTTTTTCTCTTCATTACTTTTTTTTT
CTTCTCTCCNCTTTTTTTTTTCCTCTCTCCCCTTCTCCTTCCCCTCTTTT
TTTTTTTTTTTTTTTTTTTCCCTCTATTTCTTCCCTCCTTTCTTTCTTCT
CCTCTTCTTTCTCTTTCCTTTTTCTTTTTTTTCTTTTTTTTTTTTCTTTC
CTTTTCCTTTTTCTCTTTCTTCTCTTTCCCCTTTTCCTTCTTTCTTCTTC
CTTCCTTATTTTCTCTTCTTTCCTTTTTATCCCCCTTTTTCCTCCTTTTT
CCTTTTTTTTTTTTCTCTCCTCTCTTTTTTTTTCTTTGCGCTCTTTTTTT
TATCACTTCTTTCCTTATCTTTTTTCCTCCTTTTTTTACTTCTTTTTCTT
CTTTTTCTTCTTCCTTTTTTTTTCTTTCTTCTTCTCTCTTTCTTTTCCCT
CTTTTTTTTTTTTCCTCTTTTCTTTCTCTTTATCTTTTTCTTCCATTCCT
TTCCTTCTCCTTTCTTTCTCTCTTTTTTCCTCTCTCTCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_n08.b1 MSMg01no430_n08.b1 CHROMAT_FILE:
MSMg01no430_n08.b1 PHD_FILE: MSMg01no430_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:53 2005
         (239 letters)



>mm_chr5_114855695_114856332
          Length = 638

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgagacctcactgacttctagacaaatgggagaatagcatgctagcttttctagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaatgagacctcactgacttctagacaaatgggagaatagcatgctagcttttctagaca 379

                                                                       
Query: 61  cctcctgcacggcctggagacgaaacgtatggtgtctaaggtctgccttggagttatgct 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 378 cctcctgcacggcctggagacgaaacgtatggcgtctaaggtctgccttggagttatgct 319

                                                                       
Query: 121 ggggcaggggagctcctggggtttaaaggaagcaagtaaggccgtgagctggcgacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggggcaggggagctcctggggtttaaaggaagcaagtaaggccgtgagctggcgacacac 259

                                                                      
Query: 181 ctgaggggctctacaatcgtcctcccttctgtttactcgaaactgttcccagtgggaag 239
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctga-gggctctacaatcgtcctcccttctgtttactcgaaactgttcccagtgggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space:   144670
Effective search space used:   144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)