Query= MSMg01no430_n22.b1 MSMg01no430_n22.b1 CHROMAT_FILE:
MSMg01no430_n22.b1 PHD_FILE: MSMg01no430_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:56 2005
(393 letters)
>mm_chr5_83719024_83719816
Length = 793
Score = 629 bits (325), Expect = 0.0
Identities = 360/389 (92%), Gaps = 29/389 (7%)
Strand = Plus / Plus
Query: 5 gaattctttttgtttactcatatacttgacttcttgtatgctaatactatgtagaaaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttttgtttactcatatacttgacttcttgtatgctaatactatgtagaaaaca 264
Query: 65 aatggaacctaaaattttttgtataagcttttggaaagtagagtgtatcttgctaaggtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatggaacctaaaattttttgtataagcttttggaaagtagagtgtatcttgctaaggtc 324
Query: 125 tcatttaactatatatatatgtatatatatacacacacacacacacacacacacacacac 184
||||||||||||| |||||||||||||||||||||
Sbjct: 325 tcatttaactata--------------------------cacacacacacacacacacac 358
Query: 185 acacacacacacacacacacacatatatatatatatatatttggtccacaaataacagca 244
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 359 acacacacacacacacacacacatatatatatatatatat--ggtccacaaataacagca 416
Query: 245 tgtatatatgttctttttcttgtttaacatggtaatgaaaaaa-tcatatttctattatt 303
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 417 tgtatatatgttctttttcttgtttaacatggtaatgaaaaaaatcatatttctattatt 476
Query: 304 ttgcactttttatatttcctatgctaattttacaaattttcagtgtactttgtattctca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttgcactttttatatttcctatgctaattttacaaattttcagtgtactttgtattctca 536
Query: 364 ctgttataagaacttcataattatcatta 392
|||||||||||||||||||||||||||||
Sbjct: 537 ctgttataagaacttcataattatcatta 565
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no430_n22.g1 MSMg01no430_n22.g1 CHROMAT_FILE:
MSMg01no430_n22.g1 PHD_FILE: MSMg01no430_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:56 2005
(400 letters)
>mm_chr5_83812086_83812885
Length = 800
Score = 750 bits (388), Expect = 0.0
Identities = 397/400 (99%)
Strand = Plus / Minus
Query: 1 caaacaaagtttacatacattaaagattcagcgatgataaatttatttttctataaataa 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 599 caaacaaagtttacatacattaaagattcagcgatgacaaatttatttttctataaataa 540
Query: 61 ttcaaaattcaaatatttaattcctctctttcaagtaaacatactgaaatatattttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttcaaaattcaaatatttaattcctctctttcaagtaaacatactgaaatatattttcct 480
Query: 121 agtgatgcattagaattgaaaggtgaattcacggtacacatcactctactcaaacgtcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 agtgatgcattagaattgaaaggtgaattcacggtacacatcactctactcaaacgtcac 420
Query: 181 agataaaactgcatgaaattatttttttcctggattacctgtcttccaggcatgtttaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agataaaactgcatgaaattatttttttcctggattacctgtcttccaggcatgtttaca 360
Query: 241 taataatttcaattttgtgctaaatgtgtaaatttcctttaatttatgtgcagttatatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 359 taataatttcaattttgtgctaaatgtgtaaatttcctttaatttatgtgcagatatatt 300
Query: 301 tttaaattgtttcttttggaaatatcacctttcagacacagcagaactgattgatacgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tttaaattgtttcttttggaaatatcacctttcagacacagcagaactgattgatacgca 240
Query: 361 tggactaatggactcacaaagactgtggcagcacacatag 400
|||||||||||||||| |||||||||||||||||||||||
Sbjct: 239 tggactaatggactcaaaaagactgtggcagcacacatag 200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
