Query= MSMg01no430_p16.b1 MSMg01no430_p16.b1 CHROMAT_FILE:
MSMg01no430_p16.b1 PHD_FILE: MSMg01no430_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:06 2005
(515 letters)
>mm_chr5_127435643_127436563
Length = 921
Score = 845 bits (437), Expect = 0.0
Identities = 502/543 (92%), Gaps = 32/543 (5%)
Strand = Plus / Minus
Query: 5 gaattccattgcatttatgggcaggggagttggatcagtgggtaagagcccttgacgtga 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 659 gaattccattgcatttatgggcaggggagttggaccagtgggtaagagcccttgatgtga 600
Query: 65 aagcataaggacttaagtttgaatctctactcaacatgtaaaagggtgagcatgattgta 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 599 aagcataaggacttaagtttgaatctctactcaacatgtaaaaggttgagcatgactgta 540
Query: 125 cacgaaggggcctctaaccctagtgctggagtctgggaggcaaagacaggaagatcctga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 539 cacgaaggggcctctaaccctagtgctggagtctgggaggcaaagacaggaagatcccga 480
Query: 185 aagcttgattcatgggctacagactgaatgacattgtaacaaagga------cagtgagt 238
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 479 aagcatgattcatgggctacagactgaatgacattgtaacaaaggagtatggcagtgagt 420
Query: 239 gacagaatgaggcaactggagtcctctgcaagcttctgcacaaatatgcaagggtgcttc 298
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 419 gacagaatgaggcaactggagtcctctgcaagcttttgcacaaatatgcaagggtgctcc 360
Query: 299 caaccctgtcctccccaacttacaaataactggagtcttcctctagcctacacacacaca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 caaccctgtcctccccaacttacaaataactggagtcttcctctagcctacacacacaca 300
Query: 359 cacacacacacac------------------------acacacacacaaatgggtgctcc 394
||||||||||||| |||||||||||||||||||||||
Sbjct: 299 cacacacacacacacacacacacacacacacacacagacacacacacaaatgggtgctcc 240
Query: 395 caccccatcgtctccaactcacaaatatctggagttctcctcaagcctcc--atatatat 452
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 239 caccccattgtctccaactcacaaatatctggagttctcctcaagcctccatatatatat 180
Query: 453 atgcatgagtgctcccatgcctttcctccccaactcactaatgacactattgtgtttatt 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 atgcatgagtgctcccatgcctttcctccccaactcactaatgacactattgtgtttatt 120
Query: 513 ttc 515
|||
Sbjct: 119 ttc 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 921
Length adjustment: 10
Effective length of query: 505
Effective length of database: 911
Effective search space: 460055
Effective search space used: 460055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no430_p16.g1 MSMg01no430_p16.g1 CHROMAT_FILE:
MSMg01no430_p16.g1 PHD_FILE: MSMg01no430_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:06 2005
(341 letters)
>mm_chr5_127430387_127431127
Length = 741
Score = 632 bits (327), Expect = 0.0
Identities = 336/339 (99%)
Strand = Plus / Plus
Query: 1 attgaattaatggagtattgatttcagtggaggaggcatgtttaaacggtggaggttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgaattaatggagtattgatttcagtggaggaggcatgtttaaacggtggaggttcag 260
Query: 61 gctgtaaaggatttcaaagtggcttgtaaacctaagcagagaagaacagcctagggctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtaaaggatttcaaagtggcttgtaaacctaagcagagaagaacagcctagggctga 320
Query: 121 ggtacctgcttggaaactgcttccagtgggagggcatttggctcagacacagaaggcgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtacctgcttggaaactgcttccagtgggagggcatttggctcagacacagaaggcgtc 380
Query: 181 aacaacatgtctgtttgaaaattccatgtccatgacgggcattttggcgaagtattcatg 240
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 381 aacaacatgtctgtttaaaaattccatgtccatgacgggaattttggcgaagtattcaag 440
Query: 241 agtaacaatcaaactgtagtacgtcccttcgttttgatgacaaatttgatttttgaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtaacaatcaaactgtagtacgtcccttcgttttgatgacaaatttgatttttgaattt 500
Query: 301 tgagtgtgtgtatgaaaatatattaggccatttgaaagc 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagtgtgtgtatgaaaatatattaggccatttgaaagc 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
