BAC Information

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BAC

Clone NameMSMg01-431C13
Chromosome5 (Build37)
Map Location 141,401,647 - 141,401,918
singlet/doubletsinglet
Overlap geneCard11
Upstream geneA930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12
Downstream geneLOC623466, Sdk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431C13.T7 (MSMg01no431_c13.b1)MSMg01-431C13.TJ (MSMg01no431_c13.g1)
ACCAG523482AG523483
length756748
length of high quality
(start - end)
272 (322 - 593)469 (65 - 533)
definitionCHROMAT_FILE: MSMg01no431_c13.b1 PHD_FILE: MSMg01no431_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:20 2005CHROMAT_FILE: MSMg01no431_c13.g1 PHD_FILE: MSMg01no431_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAATAGCGCGGAATTCCCCAG
GGATAGCCTGAAAAGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCC
CTAGTGAGGGGCTGCGGCGTGGCTCAGTGGTGAAGTACCTACAGTACTGT
AACATGTATGAGGTCACATGTTTCATCCTCAATTACCTGCCCCCCCCTCC
CAAATAGGAAAAAAGCAATGTCAGCTCCTCCTGAGGAGAAGAGGCTTACA
TATGTGATCTGGGAAGGCTATCCAGGATCCATCACTGATGTAGCTCCAGA
GCACAGTTGGTGTCATGAATAGTGTATACATGTTTGTTTTGTCTACTATG
CACATTATGAGTCAGTTTTTAGTGCCCAAAATAGTTCACAGTCAAGGTAG
CATAGTCAGTCCAAAAGCATCAAACATCATGGACTCAATTTCAAGTTTAG
TTTCCCTCTAAGCACTGCAACCTGGTCTGACCCGTCCTCTTCACTTGGGA
CCACCCGGTGGTGTATGTCAGGTTTCTCTGAATGCAAGCTGCCTTCACAT
CTCCCTCTGACACTCGGAGACTCTTGATTTTCACAGCCTGCGGNGATGAA
GGGTTTGTGTCTAACCTGTTTGAGTCCTGGCTCTGTTGAGTCTCACCCTG
TATCTTAGTGCTCTCCGNGGAAAGAGGCAGACACAAGGCCCAGCCTCCCC
ACTGAGCCCCGTGGGATGAAAACTTTTATTTTTTTCCACGAGGTAATTCT
AACGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTT
ATTTGATTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGG
ATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATATACTAGC
AAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTAGGC
CGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGG
ATCACAGGGCTCCTCTTTGGAGGAGCTAGAGAAAGAACCCAAGGAGCTAA
AGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACC
CCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGG
CCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCA
GTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGT
TNNNNTTTNNTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTGG
TTTTTTTGTGTTGGTTTTTTTTTNGTTTTGTTTTTTGCTTTCCCTCTTTT
TTCTTCTCTTCTTCCCCTCTCTCTTTTTTCTCTCTCCCCTTTCACCCCAT
TCCCTTTTCCCTTTTTTCTCTTCCCTTCCCTTCTCCTCCCCCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_c13.b1 MSMg01no431_c13.b1 CHROMAT_FILE:
MSMg01no431_c13.b1 PHD_FILE: MSMg01no431_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:20 2005
         (272 letters)



>mm_chr5_141401447_141402118
          Length = 672

 Score =  526 bits (272), Expect = e-154
 Identities = 272/272 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtatacatgtttgttttgtctactatgcacattatgagtcagtttttagtgcccaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtatacatgtttgttttgtctactatgcacattatgagtcagtttttagtgcccaaaa 260

                                                                       
Query: 61  tagttcacagtcaaggtagcatagtcagtccaaaagcatcaaacatcatggactcaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagttcacagtcaaggtagcatagtcagtccaaaagcatcaaacatcatggactcaattt 320

                                                                       
Query: 121 caagtttagtttccctctaagcactgcaacctggtctgacccgtcctcttcacttgggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagtttagtttccctctaagcactgcaacctggtctgacccgtcctcttcacttgggac 380

                                                                       
Query: 181 cacccggtggtgtatgtcaggtttctctgaatgcaagctgccttcacatctccctctgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacccggtggtgtatgtcaggtttctctgaatgcaagctgccttcacatctccctctgac 440

                                           
Query: 241 actcggagactcttgattttcacagcctgcgg 272
           ||||||||||||||||||||||||||||||||
Sbjct: 441 actcggagactcttgattttcacagcctgcgg 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)