BAC Information

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BAC

Clone NameMSMg01-431C16
Chromosome5 (Build37)
Map Location 44,143,423 - 44,297,004
singlet/doubletdoublet
Overlap geneFbxl5, Bst1, Cd38
Upstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik
Downstream geneEG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431C16.T7 (MSMg01no431_c16.b1)MSMg01-431C16.TJ (MSMg01no431_c16.g1)
ACCAG523488AG523489
length779806
length of high quality
(start - end)		479 (38 - 516)249 (66 - 314)
definitionCHROMAT_FILE: MSMg01no431_c16.b1 PHD_FILE: MSMg01no431_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:21 2005CHROMAT_FILE: MSMg01no431_c16.g1 PHD_FILE: MSMg01no431_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,143,423 - 44,143,894)(44,296,757 - 44,297,004)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCTGTT
GGGTTTCCTGTTTTTGAAACATTCTTGCCAGACAGTACTGAATAGCCTAG
AAGTCACTGTACAAAACAGTTTGGCAGTAAACAGCAACTCTCCATTGACT
CCTTCCTAAGAGCTGGGATTACGGGCATATGCCACACCTAGCCAGAACTA
CAGGAATTATCGATACTCAGAGAATACTGAATGGTAAAGATTGGAAAGGG
CATGTTTTAAATCTATTTTATCTTATAATCTAATTTTAAACGATTTTCCC
CCATCATTTTTCCATCTCGACAGACCTCAGGTTAACAATGGTAGTAGTTC
AGAATCTATGTGGTTTGACATGAAAGAGGAAATTTTTTTAGACAGGGTTT
ACAGTTCAAGTTAACCTTGAACTCATAAACCCAAGGATGGTCTGGAACTC
AAAATTCTTTTGCCCAAGCCTCCTATGGGCTAGAATTAACTGGTCCAAGA
AATTTTTTTTTTTAGACCAGGCTGGCCTCAAACTCAGAAATCTACCTGCC
TCTGCCTCCTGAGTGCTGGGATTAAAGGAATGTGGCCACACGCCCGGCTC
CTAGAAAAAATTTTAAAAGGAAGAAAATACTTAAAATTCCCTAATTCTTA
AGGTCTAAGACTTTGGGCAGTTCCCATAAAAAGGACCTTTCCAAGGGAAA
TCCGAAAGCCCACATGTGGCGGGAAGGGAAAAGGGTACAAAAGGTGCGTG
GTACATCCTTTGTTCCACCCCCGGATTTN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTAATGCAGCCATGGCAATTTGCATGAATGAAAGC
ACTCACTTGGTATCATGTTCTGTAGATGCTACATCTTATTTAGCAGAAGT
AAGGTGGACAATTTAGGGGAACACTGTAGAAAGGGAAGCCCAGGTAAGAG
GCAGTGATCCTGAGGTTCTAGAAAGGCATAAAGAGGGAGGGGGTGTGGTG
CTTGAATAAAAGAACATGGTTGAACAAGGAGTTTTATTTCTTCATGCAAT
CAACTTTCAGCTGTTTTTTTCTGCTAAGCACTGGAGGTCACCATGGGAAC
GGAGTACTGTTCAGCTTCCTTTGGAGACAGACCTCTGGGACGTGGGTCTC
CTTCCACGACATCCGTGTTCATTACTTAACAACATTTCATTGTTATGGCG
GTCTGAACAGTTTTTAGCCGTCCGCACTAATAGCTTTTGTATACCCTCGA
GCTCGGCATTCTTACTGTGCTCCTAGTACTCCCTTTTTCTCTACCCTCCT
TGCCTGACCTTACCCCGTGTTTTTTTCATTTATCTTCCCCGCGTTTCCCC
GTTTGCTTCCTTCCATCCCTTTTTTCTCCTGCCCCTTTCCTCATCTCTTT
TCTCCCATTCTCTTTTTTCCTTTCCTCCCACGTACTTCCTCTTTGTTTTA
TTCGTTATTTTTTTTTCCCCCCCTCCCCTCTTCTTTTTTTCTCCCCTCTT
TTCTCCCTGTCTTCTTTCTCGCCTTCCCCTTTGTTTCGTTGTTCCCCTTT
CTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_c16.b1 MSMg01no431_c16.b1 CHROMAT_FILE:
MSMg01no431_c16.b1 PHD_FILE: MSMg01no431_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:21 2005
         (479 letters)



>mm_chr5_44143220_44144098
          Length = 879

 Score =  882 bits (456), Expect = 0.0
 Identities = 468/472 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctgttgggtttcctgtttttgaaacattcttgccagacagtactgaatagcctag 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgttgggtttcttgtttttgaaacattcttgccagacagtactgaatagcctag 263

                                                                       
Query: 64  aagtcactgtacaaaacagtttggcagtaaacagcaactctccattgactccttcctaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagtcactgtacaaaacagtttggcagtaaacagcaactctccattgactccttcctaag 323

                                                                       
Query: 124 agctgggattacgggcatatgccacacctagccagaactacaggaattatcgatactcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctgggattacgggcatatgccacacctagccagaactacaggaattatcgatactcag 383

                                                                       
Query: 184 agaatactgaatggtaaagattggaaagggcatgttttaaatctattttatcttataatc 243
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaatactgaacggtaaagattggaaagggcatgttttaaatctattttatcttataatc 443

                                                                       
Query: 244 taattttaaacgattttcccccatcatttttccatctcgacagacctcaggttaacaatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taattttaaacgattttcccccatcatttttccatctcgacagacctcaggttaacaatg 503

                                                                       
Query: 304 gtagtagttcagaatctatgtggtttgacatgaaagaggaaatttttttagacagggttt 363
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 gtagtagttcagaatctatgtggtttgacatgaaagagggaatttttttagacagggttt 563

                                                                       
Query: 364 acagttcaagttaaccttgaactcataaacccaaggatggtctggaactcaaaattcttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acagttcaagttaaccttgaactcataaacccaaggatggtctggaactcaaaattcttt 623

                                                               
Query: 424 tgcccaagcctcctatgggctagaattaactggtccaagaaatttttttttt 475
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 624 tgcccaagcctcctatgtgctagaattaactggtccaagaaatttttttttt 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_c16.g1 MSMg01no431_c16.g1 CHROMAT_FILE:
MSMg01no431_c16.g1 PHD_FILE: MSMg01no431_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:21 2005
         (249 letters)



>mm_chr5_44296557_44297205
          Length = 649

 Score =  449 bits (232), Expect = e-131
 Identities = 244/248 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatgcagccatggcaatttgcatgaatgaaagcactcacttggtatcatgttctgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttaatgcagccatggcaatttgcatgaatgaaagcactcacttggtatcatgttctgtag 389

                                                                       
Query: 61  atgctacatcttatttagcagaagtaaggtggacaatttaggggaacactgtagaaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atgctacatcttatttagcagaagtaaggtggacaatttaggggaacactgtagaaaggg 329

                                                                       
Query: 121 aagcccaggtaagaggcagtgatcctgaggttctagaaaggcataaagagggagggggtg 180
           |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||
Sbjct: 328 aagcccaggtaagaggcagtgatcctgaggctctagaaaggcataaagaaggagggagtg 269

                                                                       
Query: 181 tggtgcttgaataaaagaacatggttgaacaaggagttttatttcttcatgcaatcaact 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 268 tggtgcttgaataaaagaacatggttgaacaaggagttttatttcttcatgcaaccaact 209

                   
Query: 241 ttcagctg 248
           ||||||||
Sbjct: 208 ttcagctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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