BAC Information

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BAC

Clone NameMSMg01-431F05
Chromosome5 (Build37)
Map Location 137,746,333 - 137,746,789
singlet/doubletsinglet
Overlap geneArs2
Upstream geneCutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik
Downstream geneTrip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431F05.T7 (MSMg01no431_f05.b1)MSMg01-431F05.TJ (MSMg01no431_f05.g1)
ACCAG523610AG523611
length7561,469
length of high quality
(start - end)		457 (69 - 525)---
definitionCHROMAT_FILE: MSMg01no431_f05.b1 PHD_FILE: MSMg01no431_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:35 2005CHROMAT_FILE: MSMg01no431_f05.g1 PHD_FILE: MSMg01no431_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATGCGCGGAATT
CCCTAGAATTTCAGCTAAGTGTCTCTTTCCTGTGGCTCTCCAAAGCACTA
CATAGATGGCCATCTTCTGCTCCTCAGAACTTAAGTTCCTTTGCAATGAT
CATGCCTACTTGTGACATGTAACCAAAGCCACTTTGACCTCTGAAAGACT
TCATCTAGCTTCAGACTCAGAAAAGCAAATTTGATTTTCTTTTTTCTTAA
AGAAGCACTAAGGCCAGCTGGGCATGGTGGCTCACCCTTCTATTTCCAGC
CCTGAAGAGGCTTAAGGTATTATCGTTATGTTCCAGGTCAGCTTATTCTA
CATGAGGCCCTTTCTTAAAACCTAAAGGGCAAGGGGGCTAAGAGAGATGG
CTCTCAGAGTTCAAAGAAGCAAGGCTCGGCTCCTAGGAGCCACACAGCAG
CTCACATCCTTCTGTCAGTTCCAGCTCTAAGGATACAACACTGTTCTGGC
TTCCTACAGCTATCAGGCACAGCATGAATGTGGTGCACAGAAATCACGTA
TGTAAAACACTTATACATTAAAAAAACAAAAACCACAGTGCCGCACACTT
TTAACCCCAGCACTCCGGAGGTATATGCCAAAGCCAGGTAGATCCCCTTG
AGTTCCAGGTCCAGCCTGGTCCTAAGTACTGAATTCCCGCAATGGCTCTG
CTGGCTCAAACAAACTTCTGTCCCCCTCTTCTATTCCTTACACCTTATTT
ATCTCT

CACTAGCCACAATCCTCTCCCTGGTCGCGTCGAATCATTGGCTCAGTACC
CCACACGAATACACGGTGTGCTCTCTAACTTAGTATTGGGATTATTACCC
AGGCGATGCTCTATAGTCCACGACCATCGACCNGGCTCAACGACTAATGT
CTATAATGCATCTATATATTCTCATACTGTTCGATGCGGCGCGTGTCGCG
CAGTCACGCTTGTGTGTGCCTGTGTGCTAGCGCCGTCGGCCTGTGGCGCG
CAATGTTGTACTCGTCTATCGGCGGCGCGCTCTAATAGCACGTACTACAT
ATGNGCACTTAGGTGTGTAGCGACCGATGTGCGCAGAGTGACTCGGCATA
GTAGCGGTACTTACGAGCGCTTTCGTATCACCGAACATAGTACGCTGCTC
TATTTTTGGTGGCGTCTCTTCAGCGCGCGTCGCTGCGCAGATGTTTAGAC
TTTTCAGCTAGCGACGCTCATCTTTACGGCTTCGTATACGGATCGATTTT
TCTATATTATTGCCGCGCTGCTACTCCATTAATATCCGCTCCCTGTCGTT
ATTCGTTAGTGCTGATCTCGACTTTGCGCTGTCCGGCGCCTTGATATTCT
CTGACGCGAGTCTTGCCGTGTACACCACATATGACTCTATCACCTCGCTA
TNTGCATTGAGACTGCTGTCTCGCGACGTATGTGTGCGCTATATTTTACG
TTTCCTAGCGCGGCTGCGTCGACACGGTTTCCGCGCGACTCGTTGTCTTT
TGCGCACGATCCCTCTTATTCACTGACCCCGGCTGAGCTGGTGTCTGAAT
ATCTCTTACGTCGTTGGCGCGCTGGACGAATCGTGTATTATGAACGATAA
CTACACACCAGTCACGTTATGCGTTTAGCGACGTACGCGCGCTGTGACCG
CCGCTTTATGATATTTGATGTGGTGTAGCCGGACGCTCGCCTTATCGCAT
CGCCGTGCATGTTTCTCTCCTCGTGCTACTTTTACGCCAACACCACTGTC
TTATAGTCTATGTCTAATATATCTCTATCATCCCTCGACATTCGCCTCGT
TCGCGCGATCTCGATTCTCTGGTCTCTTACATTCGACGCNCGCTCATTCT
CACGCTCGATTCTCCGCTGCGCTCGTTTAGCGCGACGCCCGCTCGTACCA
ACCGCCGATTCGTATGCCGCTGATAGGCGGTATCTATCCGCTATGCGCCA
TACGCGGGTTCTCATGTGCGGCGTGTGTATAGAACATGAGACGACAATCG
GCGACACGCATTCGATATCGCTTATGAACACNACTANTATATATGTGAGA
CCTGCGTTGTACAATAAGTACATAGTCGTCTGCTACACCGCTGCGCGATG
TATATAAATTTATTGCGCCGATTGTCTTCGCCTCTCNGCACTGCTCGCTT
ATCTGTTATAGTCTATCACGACATACCGCTCGTCACGATATCGCAGAAGC
GTTACACGTGCATAGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_f05.b1 MSMg01no431_f05.b1 CHROMAT_FILE:
MSMg01no431_f05.b1 PHD_FILE: MSMg01no431_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:35 2005
         (457 letters)



>mm_chr5_137746133_137746989
          Length = 857

 Score =  816 bits (422), Expect = 0.0
 Identities = 449/458 (98%), Gaps = 2/458 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtctctttcctgtggctctccaaagcactacatagatggccatcttctgctcctcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtctctttcctgtggctctccaaagcactacatagatggccatcttctgctcctcaga 260

                                                                       
Query: 61  acttaagttcctttgcaatgatcatgcctacttgtgacatgtaaccaaagccactttgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttaagttcctttgcaatgatcatgcctacttgtgacatgtaaccaaagccactttgac 320

                                                                       
Query: 121 ctctgaaagacttcatctagcttcagactcagaaaagcaaatttgattttcttttttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgaaagacttcatctagcttcagactcagaaaagcaaatttgattttcttttttctt 380

                                                                       
Query: 181 aaagaagcactaaggccagctgggcatggtggctcacccttctatttccagccctgaaga 240
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaagcactaaggtgagctgggcatggtggctcacccttctatttccagccctgaaga 440

                                                                       
Query: 241 ggcttaaggtatta-tcgttatgttccaggtcagcttattctacatgaggccctttctta 299
           ||||||||| |  | | ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 441 ggcttaaggcaggagt-gttatgttccaggtcagcttattctacgtgaggccctttctca 499

                                                                       
Query: 300 aaacctaaagggcaagggggctaagagagatggctctcagagttcaaagaagcaaggctc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaacctaaagggcaagggggctaagagagatggctctcagagttcaaagaagcaaggctc 559

                                                                       
Query: 360 ggctcctaggagccacacagcagctcacatccttctgtcagttccagctctaaggataca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggctcctaggagccacacagcagctcacatccttctgtcagttccagctctaaggataca 619

                                                 
Query: 420 acactgttctggcttcctacagctatcaggcacagcat 457
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acactgttctggcttcctacagctatcaggcacagcat 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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