BAC Information

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BAC

Clone NameMSMg01-431H10
Chromosome5 (Build37)
Map Location 138,150,733 - 138,360,276
singlet/doubletdoublet
Overlap geneLOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13
Upstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl
Downstream geneLOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431H10.T7 (MSMg01no431_h10.b1)MSMg01-431H10.TJ (MSMg01no431_h10.g1)
ACCAG523716AG523717
length758740
length of high quality
(start - end)		439 (45 - 483)427 (71 - 497)
definitionCHROMAT_FILE: MSMg01no431_h10.b1 PHD_FILE: MSMg01no431_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:47 2005CHROMAT_FILE: MSMg01no431_h10.g1 PHD_FILE: MSMg01no431_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,150,733 - 138,151,150)(138,359,850 - 138,360,276)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGCTATCCTAGACTACAGGAGACTGTTTAAAACAATCCAAAAGA
AAGAACGAAAAGAAAACCAGGAAGTGGGGCTCTAGGGCCATGCTCAGTGG
GCAGAACACATGTCTAGACTATGTGGTTCTGTGGGTCCAATCCCCAGAAG
AACAAGCCGGGCTTAGAGATGCTCTTCTGTAATTCTCCTACGAGGGAGGA
GGAGGAGGAGGCAGGAGGAAAAGGAACTAACGGTTATTCCTGACTGTATA
GCAGTTTCAAAACAATCCTGGGCTACATGTGACCCGATCCCAAAACTAAA
TACAACAAAAACTTCATAAAGATAAAACTATAAGGTGAAAAATTATCAGA
GACATAACTGTAGAAGATGGGCGGCCTAGAATAGCCAATGTTTCTGGATG
AAGAGGACACACGTGCACACACGCGCGCGTGCGTGCACACACACACACAC
ACACACATTACACTACAATGGGTCATAATGTAACCCTATTATCCTAAACA
CTGGAACATAGGTGCCTGGACCCCTTGGTGCCCAGGGACCTAATAAATTC
TCCGACCTTCACGCATATTATTTTTTTAACTCCTTCCCTCATTATCTACT
TTTATACCCTTCTAAATTCTTTTTTTCTCTTCCGGCTTTGGGGGCGACCC
CTTCTCCCCTTTTTCTTCTCTTTCCTCTCTCTTGCTTTTTTTTCGTCTCC
CCTTTTAG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGGGCCAAAACCTCTGCCTTTCTTGGGGA
CGATTCTTGCTTACCAGAAGGTGAGTGAGTGTTCCTTGAGCCCCCTACCT
TGCTTCTTGTGGTTACCAAGACTGGCTTAGTTCCATTAATTCCCTTGAGT
AGAAACTGAGGTAGAATTTCAGAAACCATTATTTGGCTTCGACGTGAAGC
AAGATAAGTTTCCCCAAGGCTTTGCTGTTGGTCTTTGGAGAATCCTGTTT
GGCACAGATGCTCAGCTCTCTGACGTGTCAACACTCATGTTGAGGACTTG
ATGTTTAGATTTGTGATCCTTTAAAGGCAATATCCTTCTATTCCACTCTT
CCAATTTTCCCTCCTGTGGACCCCTCTCATAACACACTATGAATCACTTG
AGATCTTTTAATATGTGTCTATATATGCCTCATGCTTATTTATTTGTCCT
AACCAGGGAAAGCTAGGCTCTTGGAATTTTTATTTGCATATTTAAATTTT
ACGACGGACACCTAGCATAATTTTTCCCCTTTTAGCCCTCACAAGTGACC
ACTCTTATCCACGTTCCAAATTTTTTATGGCTGCTCTTTCGTTCTTTTCC
CACCCCTCTCTTTTTTCTCCGCCCCCATTTATCTTTCCTTTCTTTTTTCT
TCTTTCGATTTTTCCTCCTATTTTTCCCCTTTTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_h10.b1 MSMg01no431_h10.b1 CHROMAT_FILE:
MSMg01no431_h10.b1 PHD_FILE: MSMg01no431_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:47 2005
         (439 letters)



>mm_chr5_138150529_138151367
          Length = 839

 Score =  785 bits (406), Expect = 0.0
 Identities = 415/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggctatcctagactacaggagactgtttaaaacaatccaaaagaaagaacga 64
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattccaggctagcctagactacaggagactgtttaaaacaatccaaaagaaagagcga 264

                                                                       
Query: 65  aaagaaaaccaggaagtggggctctagggccatgctcagtgggcagaacacatgtctaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagaaaaccaggaagtggggctctagggccatgctcagtgggcagaacacatgtctaga 324

                                                                       
Query: 125 ctatgtggttctgtgggtccaatccccagaagaacaagccgggcttagagatgctcttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctatgtggttctgtgggtccaatccccagaagaacaagccgggcttagagatgctcttct 384

                                                                       
Query: 185 gtaattctcctacgagggaggaggaggaggaggcaggaggaaaaggaactaacggttatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaattctcctacgagggaggaggaggaggaggcaggaggaaaaggaactaacggttatt 444

                                                                       
Query: 245 cctgactgtatagcagtttcaaaacaatcctgggctacatgtgacccgatcccaaaacta 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 cctgactgtatagcagtttcaaaacaatcctgggctacatgtgacctgatcccaaaacta 504

                                                                       
Query: 305 aatacaacaaaaacttcataaagataaaactataaggtgaaaaattatcagagacataac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatacaacaaaaacttcataaagataaaactataaggtgaaaaattatcagagacataac 564

                                                                     
Query: 365 tgtagaagatgggcggcctagaatagccaatgtttctggatgaagaggacacacgtgc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtagaagatgggcggcctagaatagccaatgtttctggatgaagaggacacacgtgc 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_h10.g1 MSMg01no431_h10.g1 CHROMAT_FILE:
MSMg01no431_h10.g1 PHD_FILE: MSMg01no431_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:47 2005
         (427 letters)



>mm_chr5_138359650_138360476
          Length = 827

 Score =  818 bits (423), Expect = 0.0
 Identities = 426/427 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggccaaaacctctgcctttcttggggacgattcttgcttaccagaaggtgagtgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctgggccaaaacctctgcctttcttggggacgattcttgcttaccagaaggtgagtgagt 568

                                                                       
Query: 61  gttccttgagccccctaccttgcttcttgtggttaccaagactggcttagttccattaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gttccttgagccccctaccttgcttcttgtggttaccaagactggcttagttccattaat 508

                                                                       
Query: 121 tcccttgagtagaaactgaggtagaatttcagaaaccattatttggcttcgacgtgaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcccttgagtagaaactgaggtagaatttcagaaaccattatttggcttcgacgtgaagc 448

                                                                       
Query: 181 aagataagtttccccaaggctttgctgttggtctttggagaatcctgtttggcacagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aagataagtttccccaaggctttgctgttggtctttggagaatcctgtttggcacagatg 388

                                                                       
Query: 241 ctcagctctctgacgtgtcaacactcatgttgaggacttgatgtttagatttgtgatcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctcagctctctgacgtgtcaacactcatgttgaggacttgatgtttagatttgtgatcct 328

                                                                       
Query: 301 ttaaaggcaatatccttctattccactcttccaattttccctcctgtggacccctctcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttaaaggcaatatccttctattccactcttccaattttccctcctgtggacccctctcat 268

                                                                       
Query: 361 aacacactatgaatcacttgagatcttttaatatgtgtctatatatgcctcatgcttatt 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 267 aacacactatgaatcacttgagatcttttaatatgtgtctatatatgcttcatgcttatt 208

                  
Query: 421 tatttgt 427
           |||||||
Sbjct: 207 tatttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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