BAC Information

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BAC

Clone NameMSMg01-431I01
Chromosome5 (Build37)
Map Location 137,376,871 - 137,377,177
singlet/doubletsinglet
Overlap genenone
Upstream geneYwhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021
Downstream geneRabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431I01.T7 (MSMg01no431_i01.b1)MSMg01-431I01.TJ (MSMg01no431_i01.g1)
ACCAG523746AG523747
length7381,343
length of high quality
(start - end)
421 (90 - 510)---
definitionCHROMAT_FILE: MSMg01no431_i01.b1 PHD_FILE: MSMg01no431_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:50 2005CHROMAT_FILE: MSMg01no431_i01.g1 PHD_FILE: MSMg01no431_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCAGAGGATCCGCG
GAATTCTATCCCCATCACTCAGATGATTAGCATAAATAAAAAGAGAACTG
ATTCCCAAAAGCTTTTCTCTGACCTCCACAGGTGCTCACCCATACTCATA
CATACAAAATAAGACTTTGAAGCAAAATTAAAAAAAAATTAAATACAGAA
CTTGCACAGCTTTTATTATTAATATCACATTTGATTTCTTGAGAGTGTGT
GGCTGTGCACACTGTGGCACTTGTGAGGTAAGAGGACACCCCCCCCCAGG
GGAATCAGTTCCCACAGAGATCCTGGTATCCGGCTGAGGTTGACAAGGGC
TTTTAGCTGAAAGCACCTTTACCCACTGAGCCACCTCACGGGCTCCTTGA
TTCTGTTCCCAAGCAGGCTACTCCAATGGTCTCTCTGCTGGATGTTGTAA
AATCTTGATGTGATGTCTTTTTCTAAGTGTTTCTGTTGCTTGCTGTTGGT
ATTCTGTCTGGACTCCACCCCCTCAGTCACCTGGCAACAGGTACCCAGTT
AGGCCTGGCCCCCAATAAACAGGATCTGCATTGCCCCCCCTACTCTCCTG
AATCCCTGCTTCTCTTTCCTTGCCCCTTGGTTCTTTTGATACTTTTCCCT
CTCATTCCTCTCCTCTTCCTCAATCACCGCCCCTTCCTCTCCTCCCTTTT
CTTTTCTTTTCTTTCCCCCTTCCTCCTTTCTTCTCCGC
AGGAGATAGCGCCGAGTGAGAATGATGGATACAGTATCACACCTCTCACC
AATACACATATATATCCTGCTCACCTTCCTCGGCGCTCCTGATATACGCT
TAGTGCCCGNTGATGTTCTCTATGCTGAGCGTGATATTCTTGTATGACGC
GAGACGAAGGACACCTTGGTGGTTGGATAGGGCACAGCGCATAGTATGGC
GCGATGTTGGTAGATCAGATTTAAACACAGACAAAGAACACTGACGAGAT
AGAAGTATGGGCCAAGGCCGCGCGTCGAGACGCCTGACATGCTCCCTTCT
CTTTGTGTTCTATTCAACTATGTAGTTAATGACCCGCGCGTATGATAGAC
CATCTGACTACATACCCACGCTCCACACGATTTTACACACGGTTATATCA
ACGACCTACCTATAACAGTTGCGCAGATCTGGTTTACGAGCGCAGTACTG
CACGATTCGATATACGTAACTAACAGCATCGTAAACGCCGCGCGGCGATC
TCTTCATACGTGTGATCCACACTATTATCTTTTATTCACTCCAACCATCT
CGTCTCACACTAATATAAACACTATGTCATACGGCCTCTACTTTCCCTTA
ATATATTTATGTGTTTGTTGCAACCGCGCCTATATTGACCCCCTATTTGC
TCCCCGTCGAATATATAATATATGCGCGCGACGCACAGACACCTCTCTAT
CGGTGTTCTCTTCATAGACGCCGTCCGTCTGATACGATCGTGTATATGAG
CGTANTAGACAACAACCATGAATTATCGCACTCACACAGCGACACATAAG
TCATGATTCATGTGCCTGATACACGCTATTACGCNANCGCGACGACACAC
CTCTCATATTGCGCGCCTNATATATACCCACGCTATATTGATGCTTCCAC
TATATATACATGGTATGACGATGAGTATTACGCCGAACGAGATAGCCATG
CGATAAGAGTTAATATCGTGTATTCTATCGCACCGCTACGTCTATCTCGT
CTATCTATATGCAANTTGGATACGACNGAGGGCAGTAGTGTACGTGTGCA
GCGGAAGTATAGTGCGCGTCATAATATATTTCGCGGTGTGTGTGTGCTGA
TGTATCACGCGACTCCGCGGCCGCACGCGGNATAGAANTCAGCATACGCA
AGTAATGTACGTCATCAGCGAGCAGAGACGNTAGAGATATTGTAGTGTCG
CATCAACTGTAGACGTGNTTATACGCGAGCGCGCTGTGCTATGTGACGAC
GATATATATCACGCGGAATGATGTGTATCAGACGTGGTTACGCGATATAC
TTGTACGCTGTACTGATGCATCACCTACGTCACTGATATTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_i01.b1 MSMg01no431_i01.b1 CHROMAT_FILE:
MSMg01no431_i01.b1 PHD_FILE: MSMg01no431_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:50 2005
         (421 letters)



>mm_chr5_137376364_137377184
          Length = 821

 Score =  524 bits (271), Expect = e-153
 Identities = 297/307 (96%), Gaps = 3/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 118 cagcttttattattaa---tatcacatttgatttcttgagagtgtgtggctgtgcacact 174
           ||||||||||||||||   ||||| ||||||||||||| | |||||||||||||||||||
Sbjct: 814 cagcttttattattaatattatcaaatttgatttcttgtgtgtgtgtggctgtgcacact 755

                                                                       
Query: 175 gtggcacttgtgaggtaagaggacacccccccccaggggaatcagttcccacagagatcc 234
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 754 gtggcacttgtgaggtaagaggacacacccccccaggggaatcagttcccacagagatcc 695

                                                                       
Query: 235 tggtatccggctgaggttgacaagggcttttagctgaaagcacctttacccactgagcca 294
           ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tgggatccggctgaggttgtcaagggcttttagctgaaagcacctttacccactgagcca 635

                                                                       
Query: 295 cctcacgggctccttgattctgttcccaagcaggctactccaatggtctctctgctggat 354
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 634 cctcacgggctccttgattctgttcacaagcaggctactccaatggtctctctgctggat 575

                                                                       
Query: 355 gttgtaaaatcttgatgtgatgtctttttctaagtgtttctgttgcttgctgttggtatt 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gttgtaaaatcttgatgtgatgtctttttctaagtgtttctgttgcttgctgttggtatt 515

                  
Query: 415 ctgtctg 421
           |||||||
Sbjct: 514 ctgtctg 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)