XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGG
GAGAGATCCAGAGGCAGGAGATTTGCTGAAAAGATGTGACAAGATGGACA
CAGGTAACCAGACATGGCAGAATGTAGGCTAGAAAAAACATGGGCTATTT
TAAGTTATATCTAGTCAGAGAAGAGCCTAGCTATATGGCCAAGGTATTTA
AAAATATATTTTGAGTCTGAGTCTTATTTCTGGGAGCATGGGACTGGGAA
AAAGAATCAGGGCCTAATTTCAACACATGTATTTGAAACTAACTGTTGTG
ACAGTCTCACAGTGTTTGAGGCTTCTCTGCAGTGTGTTCTTTCACACACT
TGAAGGGAACATGTACATGGAAGCTTTTTCACATTGTTTACGTGCAATAG
CTATTTCTTGTGAGGCTATACCAGTACCTAGCANATACAGAAATGGATGT
GTGTGTGTGTGTGTGTGTGTGTGTGTTNTNTNTNTNNTNTTTTTTTTTTT
TTTTTTCTTTTTTTTTTNTTTNTTTTTTTTTTTTTTTTNTTCCTTTTTTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCNNTNTTCTTTTTTTTC
TCCTTCCCTTCCTCCTCCCTCTTCCTTTTCCCCTCCTCTTTTTTTCTTCT
TCCCCTTNTCTTCTTTCTCCTCCCTTTCCCCCCCCTCTTTTTCCTTTTCT
CTCTCTTTTCCCTTTTTTTTTTCTCTCTTCCTCCCCTTCCTTTCTCT

GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTGAGAAGCACC
TGAAAAAATGTTCAGCATCCTTAATCATTGGGAAATAGAAGTCTGCTGTT
TCTTCTCACTTTCCTTTGTAATCACCAGCACTCCATGGATCTTTGATCCA
GGGGCTTCTGAGTCCTGTGAAGAGGAATACACTGGGCCACGGCTATTCTG
GGACTGGTGCCCAGCATGGGTATCCCTACATGGCATGGGCAGAATGAACA
TATGCAGAACTCCTTGCCAGAATTTGCATTCAGTCCTCAAGGAAAAACGT
TTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTGGTTTTC
TTCATTTCTTTCTTTCTTTCTTTTTTTTAACAAGNTCATTAATGGATACG
CAGCACATACACCTGAGAGCTTCCGGGAAGTAACCCGAAGGGAAGGTTAA
AAATTTGCCCCTATTTAAAATTGCCACCAAAAAAAAAATTTGTTTTTAAA
TTGCCATAACATTGTAAGGGTTCTTTGACTTTCTAAAACGCAAATTTTTT
GTTATTCAATGCGTGATAAAACAAAAAATACAGAGTGGTTTTTTGTGCAT
TGTTCCTCCCTCTTTTTCCCTTCTATTACCATCTCATTTCCCCTCCTCAT
TTTCTTTTCTTTAACCT

Query= MSMg01no431_m24.b1 MSMg01no431_m24.b1 CHROMAT_FILE:
MSMg01no431_m24.b1 PHD_FILE: MSMg01no431_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:17 2005
         (413 letters)



>mm_chr5_5636999_5637811
          Length = 813

 Score =  793 bits (410), Expect = 0.0
 Identities = 412/413 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcaggagatttgctgaaaagatgtgacaagatggacacaggtaaccagacatggcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcaggagatttgctgaaaagatgtgacaagatggacacaggtaaccagacatggcaga 260

                                                                       
Query: 61  atgtaggctagaaaaaacatgggctattttaagttatatctagtcagagaagagcctagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtaggctagaaaaaacatgggctattttaagttatatctagtcagagaagagcctagc 320

                                                                       
Query: 121 tatatggccaaggtatttaaaaatatattttgagtctgagtcttatttctgggagcatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatggccaaggtatttaaaaatatattttgagtctgagtcttatttctgggagcatgg 380

                                                                       
Query: 181 gactgggaaaaagaatcagggcctaatttcaacacatgtatttgaaactaactgttgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactgggaaaaagaatcagggcctaatttcaacacatgtatttgaaactaactgttgtga 440

                                                                       
Query: 241 cagtctcacagtgtttgaggcttctctgcagtgtgttctttcacacacttgaagggaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtctcacagtgtttgaggcttctctgcagtgtgttctttcacacacttgaagggaaca 500

                                                                       
Query: 301 tgtacatggaagctttttcacattgtttacgtgcaatagctatttcttgtgaggctatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtacatggaagctttttcacattgtttacgtgcaatagctatttcttgtgaggctatac 560

                                                                
Query: 361 cagtacctagcanatacagaaatggatgtgtgtgtgtgtgtgtgtgtgtgtgt 413
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtacctagcaaatacagaaatggatgtgtgtgtgtgtgtgtgtgtgtgtgt 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)