BAC Information

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BAC

Clone NameMSMg01-431N22
Chromosome5 (Build37)13 (Build37)
Map Location 151,440,873 - 151,441,09371,621,410 - 71,621,861
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik
Downstream geneBC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431N22.T7 (MSMg01no431_n22.b1)MSMg01-431N22.TJ (MSMg01no431_n22.g1)
ACCAG524028AG524029
length786783
length of high quality
(start - end)		221 (261 - 481)452 (62 - 513)
definitionCHROMAT_FILE: MSMg01no431_n22.b1 PHD_FILE: MSMg01no431_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:22 2005CHROMAT_FILE: MSMg01no431_n22.g1 PHD_FILE: MSMg01no431_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:22 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(151,440,873 - 151,441,093)(71,621,410 - 71,621,861)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCAT
TTTGTGCTTTGTAATTTCAGAGGAAACCTTGCGATATATTAGTATTGATT
TAGTGCACTTAAACTTTATCAGCTCGTGTAACAATGATTACAGTTGTCAG
TGTCTACATTATAATGAATAGAATATGTGTATAAATAATGATTTAGAACA
ACGCTTTTTATGTAAATTCTTAACCCATCACTTTCAAGCTTTATACAGGA
AAAAAAGGGTGTTATGCCACAAATAACTCCTAGTGTTTTGTATATTTTTA
ATTGTGCCAGCATGTGTTTGCATGCATGCATGTGTGTGCCTGTGCAGTCG
CTGTCATTCATGTGGAGGTCATGAGTGAGGGTCTGGGATCAAACTCAGGT
AGATTAGATTTGGTGGCAAATGTTTTTACCCACTGAGCTATTCTTTTTTA
GTTTTTCTGTGTAGCCCTGCAACTGTCCTGGAACTCACTTTGTAGACCAG
GCTGGCCTCCAACTCAGAAATCTGCCTGCACCTGCCTCCGGAGTGCTGGG
ATTAAAGGCGTGCACCACCACGCTCGGGATCCCTTGAGCATTCTTTTGGG
GAAAAAATCTTCTCTTTAAAAAGAAGAGTTTCCTTTTTTTATAAAAAAAC
ACGGTTTCCTTTATCCAACCCCAATTGGGCTCTCAACTCCCGCAAAATCT
CAAAAAACTTGTACCTCCCCTGTTGCCCCCCCCCCCGGGTGGAAATTATT
ATAAGGTTTCGCCTCTCCTTCTTTCCTTTTTTTTGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXATATGAGTTGTAAATATTGGTATGTGGGTGATGCTTAAA
TGGACGACTGCCTTTTATTGTTGCAATAAATATCTTTGAAGTTTTTCTAT
AAAATTAAATACTGCAATCCCCATGGCAAAATAGTTATGTTTGAATATGG
CTTTAAATGAGTAAATTGTTAAAATACCCCTCATATGTGTGAAGCGCTCC
AACCATGAAGAATTGGAGATGTCTATACCTCAGCCTTTTCTATAGCTGTA
GCTGTATTTTCCATGTTTAACCTGATGTTCAATGCCTCGTGTGACCAGTG
GGTGCTGGTGGGCAGAGAGCTTCCTGGCTATACCCCACAGTGCTGAATCA
GGAATCTGAGGAAGTAGTGTTGACATCTCAAGTTCTAATGAACTTTCCTG
CTTAACTTTTATTTATGTCTGGGATTGAGAATATTGGTCTTTGGAAATCA
AAAGTGTCCTCAAGGGCTGTTGTGAGACAGATGGACACCCCTCCTTACTC
CCAGTACAGACATTCATACCCATAATGACCAAGATACTTCTTAAAGCCCT
TGGGATATGTTCATGTTTCTCCCGAGGTTCTTGTCCCCTGAACCCTATAA
AAGAATGGCACTATACTTGAAATGAATACCCCTTTTATTTGGATTATTGT
TTAAACAACCACCCGTGTTTTCTCCAAAAGATTCAGTTTCCCCCACACCC
GGATTAAAACTAATATGCTACCCTTTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_n22.b1 MSMg01no431_n22.b1 CHROMAT_FILE:
MSMg01no431_n22.b1 PHD_FILE: MSMg01no431_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:22 2005
         (221 letters)



>mm_chr5_151440779_151441399
          Length = 621

 Score =  412 bits (213), Expect = e-120
 Identities = 219/221 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttatgccacaaataactcctagtgttttgtatatttttaattgtgccagcatgtgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gttatgccacaaataactcctagtgttttgtatatttttaattgtgccagcatgtgtttg 256

                                                                       
Query: 61  catgcatgcatgtgtgtgcctgtgcagtcgctgtcattcatgtggaggtcatgagtgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 catgcatgcatgtgtgtgcctgtgcagtcgctgtcattcatgtggaggtcatgagtgagg 196

                                                                       
Query: 121 gtctgggatcaaactcaggtagattagatttggtggcaaatgtttttacccactgagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 195 gtctgggatcaaactcaggtagattagatttggtggcaaatgtttttacccgctgagcta 136

                                                    
Query: 181 ttcttttttagtttttctgtgtagccctgcaactgtcctgg 221
           ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 135 ttcttttttagtttttctgtgtagccctggaactgtcctgg 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no431_n22.g1 MSMg01no431_n22.g1 CHROMAT_FILE:
MSMg01no431_n22.g1 PHD_FILE: MSMg01no431_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:22 2005
         (452 letters)



>mm_chr13_71621210_71622061
          Length = 852

 Score =  812 bits (420), Expect = 0.0
 Identities = 444/452 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatgagttgtaaatattggtatgtgggtgatgcttaaatggacgactgccttttattgt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 652 atatgagttgtaaatattggtatgtgggtgatgcttacatggacgactgccttttattgt 593

                                                                       
Query: 61  tgcaataaatatctttgaagtttttctataaaattaaatactgcaatccccatggcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tgcaataaatatctttgaagtttttctataaaattaaatactgcaatccccatggcaaaa 533

                                                                       
Query: 121 tagttatgtttgaatatggctttaaatgagtaaattgttaaaatacccctcatatgtgtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 532 tagttatgtttgaatatggctttaaatgagtaaattgttaaaatacccctcagatgtgtg 473

                                                                       
Query: 181 aagcgctccaaccatgaagaattggagatgtctatacctcagccttttctatagctgtag 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 472 aagcgctccaaccatgaagaattggagatgtctatgcctcagccttttctatagctgtag 413

                                                                       
Query: 241 ctgtattttccatgtttaacctgatgttcaatgcctcgtgtgaccagtgggtgctggtgg 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ctgtattttccatgttcaacctgatgttcaatgcctcgtgtgaccagtgggtgctggtgg 353

                                                                       
Query: 301 gcagagagcttcctggctataccccacagtgctgaatcaggaatctgaggaagtagtgtt 360
           |||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||
Sbjct: 352 gcagagagcttcctggctataccccacattgttgaatcaggaatctggggaagtagtgtt 293

                                                                       
Query: 361 gacatctcaagttctaatgaactttcctgcttaacttttatttatgtctgggattgagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gacatctcaagttctaatgaactttcctgcttaacttttatttatgtctgggattgagaa 233

                                           
Query: 421 tattggtctttggaaatcaaaagtgtcctcaa 452
           |||||||||||||||||||||||| |||||||
Sbjct: 232 tattggtctttggaaatcaaaagtatcctcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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