Query= MSMg01no432_e19.b1 MSMg01no432_e19.b1 CHROMAT_FILE:
MSMg01no432_e19.b1 PHD_FILE: MSMg01no432_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:58 2005
(390 letters)
>mm_chr5_25147066_25147855
Length = 790
Score = 683 bits (353), Expect = 0.0
Identities = 377/385 (97%)
Strand = Plus / Plus
Query: 5 gaattcagtgatgcttcctgtctcatgcccgagagcaaaagcaacaagaactctcccctg 64
||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattcagtgatgcttcctgtttaatgcccgagagcaaaagcaacaagaactcttccctg 264
Query: 65 cagagccatccattgctccagccctgtacacgaggttatacgatgctctgaaagtgcctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagagccatccattgctccagccctgtacacgaggttatacgatgctctgaaagtgcctt 324
Query: 125 gcttgggatcacaactgcaatgttgaagaaaaaccaagttccaccagggttccacaaggt 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcatgggatcacaactgcaatgttgaagaaaaaccaagttccaccagggttccacaaggt 384
Query: 185 taggacaaaactctggattctttaactataagagggatttctggagagattcttagaaat 244
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 385 taggacaaaactctggattctttaactataagggggatttctggagagattcctagaaat 444
Query: 245 aaaagttctggagcagggacagaagaaaggctttgagtcagtgttaactatgttgaaatt 304
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 aaatgttctggagcagggacagaagaaaggccttgagtcagtgttaactatgttgaaatt 504
Query: 305 ctttatttttaaaaagtatttacttagttttattttatgtattgtgtttgcctgcaatgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctttatttttaaaaagtatttacttagttttattttatgtattgtgtttgcctgcaatgt 564
Query: 365 atatatgggtacgtgcaatgcctgg 389
|||||||||||||||||||||||||
Sbjct: 565 atatatgggtacgtgcaatgcctgg 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space: 297561
Effective search space used: 297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no432_e19.g1 MSMg01no432_e19.g1 CHROMAT_FILE:
MSMg01no432_e19.g1 PHD_FILE: MSMg01no432_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:58 2005
(382 letters)
>mm_chr5_25211248_25212029
Length = 782
Score = 619 bits (320), Expect = 0.0
Identities = 370/394 (93%), Gaps = 15/394 (3%)
Strand = Plus / Minus
Query: 1 caggacagccacggctacataggaagctcgtctctttaa-----------aaaaaactaa 49
||||||||||||| |||||||||||| ||||||| ||| ||||||||||
Sbjct: 630 caggacagccacgactacataggaagttcgtctc--taaaaaacaaaaacaaaaaactaa 573
Query: 50 atgaa-atttagaaatcacgtacatgttaattttgcctgataaagacaaatcgagatgag 108
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 572 at-aagatttagaaatcacgtacatgttaattttgcctgataaagacccgtcgagatgag 514
Query: 109 taacaaaagataacataaggaccataaggactaaaggaaacgcaggagactggcgtcacc 168
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 taactgaagataacataaggaccataaggactaaaggaaacgcaggagactggcgtcacc 454
Query: 169 aagagggcgccgcagctttactgcgcatgccctcggcttctctggctctgagcccgcaca 228
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 453 aagagggcgccgcagctttactgcgcatgccctcggcttctctggctccgagcccgcaca 394
Query: 229 gtgcgcacgcgcacacagggtcattgctttgactggctgcgtctttcgcgcttttgctaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtgcgcacgcgcacacagggtcattgctttgactggctgcgtctttcgcgcttttgctaa 334
Query: 289 atggcgttgctggcgggtaggttgaacccgcggagctggccgggcgatgtgtagcgactt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atggcgttgctggcgggtaggttgaacccgcggagctggccgggcgatgtgtagcgactt 274
Query: 349 tcgcagagcggaatccgggacggaggtgagagcc 382
||||||||||||||||||||| ||||||||||||
Sbjct: 273 tcgcagagcggaatccgggacagaggtgagagcc 240
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space: 288329
Effective search space used: 288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
