BAC Information

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BAC

Clone NameMSMg01-432F05
Chromosome5 (Build37)
Map Location 56,402,965 - 56,403,276
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432F05.T7 (MSMg01no432_f05.b1)MSMg01-432F05.TJ (MSMg01no432_f05.g1)
ACCAG524371AG524372
length828837
length of high quality
(start - end)
208 (36 - 243)314 (67 - 380)
definitionCHROMAT_FILE: MSMg01no432_f05.b1 PHD_FILE: MSMg01no432_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:00 2005CHROMAT_FILE: MSMg01no432_f05.g1 PHD_FILE: MSMg01no432_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCATTTCTGAGCCCCATTTTTTAATTTGATTTTAATTTGATTTTTAATTT
GATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAG
TCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
CATGACCCAAATCTAAAGATTTATTTATTTATTATTACATGCCAGTACTC
GGTCACTGTTTTCCAACACTCCAGAAGAGGACATCTGATCTCCTTACAGA
TGGTTGTGAGTCACCTCTGTGTTGGCTGGCATTTGATTTCTGGCCCTTCC
GAACATTTCCCTCCTGCTGAGCCATCTCCCCAGTTCTTATGTATATTTCC
TTCGCATCCCCCCATCTGTATATTACTTTCCACCTTTTTTTATTGTTCTT
ATGTTTCTCTTTACCCGTTTTATAATGTTTTCCTGATCTATGACCTTTAT
GGCTTACTCTTCCGTAATTCTTGCTTTGTTTTTCGTTACGCATCTTCCCA
CTTCCTTGCATTTTATGTTTCCGCTCTTGTTCCATTCCTTTTTACTCTTT
TTTTTCCCCCTTCTTCTTTTCGTAACTATCCTTCTTATTGTTTTTTTTCT
TCCCTCTTCCTTTTCCCCTCTTTTTTTCCCCCCCTCTTTCTTTTCCCCCA
TTTTTTCTCCACACCTATTCTCTTTTCTTATTTTTCACTTTTACTTATTC
TTATTCTTCTCTTTTTCCTATTTTTTTTTTTCTTTTTTTCTTACTTTTTT
CTCATTTTTCTTTCTTTCCTTGTTTCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTTTCAGGGAGATCTTGAACTGCATCTTTGTCA
CAAAAAGGGATTTTAGAATGAGCCATTTTGAAGCAGAGTTGGAGTATTAT
TTAGGCATGGAAGCTGGTAGAAAGACTGATACTCAAGAAGTTAATAAGAC
CCTTTCACTGATGTTCACATGGCCTTATCAAAGGGAAATAGCATCTAGTA
TCTTAGCAGTAATCATGAATACGATTGAAGGGATCCTACTAAGTTAATTT
CTTAACAAGTTTCTAGCAATTTCCCTTTCTGTCTCTGTCTCTGTCTCTGT
CTCTGTCTCTGTCTCTGTGTGTGTGTGTGTGAGGGGTGAGCTTTGTTTGT
TTTTTCTTGTCCCTTGTTTTGTTCGCACCTCTTCCCCGGGCTTATCCGCC
GCCTTTTCTCTTTCTCCTTGCGCTTTCTTCTGCGTTGCGTCCGTCTTTTG
GCTTGTGCTTCACCTTGGCTTTTCCCCCTTCCCTCACTCTTCTTTCCTTT
CCTTTTCTTTTGTTTCTGCCCTTTTTGCCGCTCTCTTGCTTCCCTTTCTT
TTTCGCCCTTTTACGTCTTTTCTTTCTTCTACCCGTTTTCTTTTCTACTT
TCGTTTGTTACCGAAATTTCCTTCGTTTTTCCTTCCTCTCTTCCCTCCTC
TCTTTTTCCGCTCTTGTCCCTCCCCCCTCAATTCCGCTGCTTTTTACCCT
CCCTCTCGTCTTTATTCTTCACCCTCCCCTCCCTCTTCCTTTTCTTTCCT
TTCCCCTTCGCTGCCGTTGCCCATCTCCCCTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_f05.g1 MSMg01no432_f05.g1 CHROMAT_FILE:
MSMg01no432_f05.g1 PHD_FILE: MSMg01no432_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:00 2005
         (314 letters)



>mm_chr5_56402816_56403529
          Length = 714

 Score =  559 bits (289), Expect = e-164
 Identities = 308/315 (97%), Gaps = 4/315 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttcagggagatcttgaactgcatctttgtcacaaaaagggattttagaatgagccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 461 tctttcagggagatcttgaactgcatctttgtcacaaaaagggattttagaatgagccaa 402

                                                                       
Query: 61  tttgaagcagagttggagtattatttaggcatggaagctggtagaaagactgatactcaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 401 tttgaagcagagttggagtattatttaggcatggaagctggtagaaagactgatactcga 342

                                                                       
Query: 121 gaagttaataagaccctttcactgatgttcacatggccttatcaaagggaaatagcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaagttaataagaccctttcactgatgttcacatggccttatcaaagggaaatagcatct 282

                                                                       
Query: 181 agtatcttagcagtaatcatgaatacgattgaagggatcctact-aagttaatttcttaa 239
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 281 agtatcttagcagtaatcatgaatacgattgaagggatcctactgaa-ttaatttcttaa 223

                                                                       
Query: 240 caagtttctagcaatttccctttctgtctctgtctctgtctctgtctctgtctctgtctc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||
Sbjct: 222 caagtttctagcaatttccctttctgtctctgtctctgtctctgtctctctctct--ctc 165

                          
Query: 300 tgtgtgtgtgtgtgt 314
           |||||||||||||||
Sbjct: 164 tgtgtgtgtgtgtgt 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)