BAC Information

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BAC

Clone NameMSMg01-432J17
Chromosome5 (Build37)
Map Location 80,580,000 - 80,717,344
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432J17.T7 (MSMg01no432_j17.b1)MSMg01-432J17.TJ (MSMg01no432_j17.g1)
ACCAG524585AG524586
length787774
length of high quality
(start - end)		395 (70 - 464)406 (76 - 481)
definitionCHROMAT_FILE: MSMg01no432_j17.b1 PHD_FILE: MSMg01no432_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:23 2005CHROMAT_FILE: MSMg01no432_j17.g1 PHD_FILE: MSMg01no432_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,716,950 - 80,717,344)(80,580,000 - 80,580,405)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGCCATTCCATTTGATTGTGGGATGGCAACCACAGACTATGGC
ATAATTTTTCACATATTGAATACTTAGTTTTTGTTTACTTTGTGTCATTA
AAATTAAAGAAACAAGGACAATATTAGTTTATATTTATAGTTTGTTCATT
CTTGTTGCAGTCATAGAATTTCACTTTATTATACCAGAAGTAATTATGGC
ACACTAATATTTGTATAAATTTTCTTGAGTTATTTTAAGAATAGGAGGGA
ACAAAAATATACAGAACACTTGTTTAACAAACAAGTCATGAGTTTGGATT
GAAGTCTACATCAAAATTTTCTCATGTACAAATAATGAATATTTTGCTTG
ATTCCAGTTTTTATTCAATGCGGAGATATAACAAGTATATGTTTCTTCAA
AACCATGCTTAAAGTTGGTGTTTGTTATGGTTTATATTGTAAATCTCTCT
AATAACTAATCTGTTATGTCTTCTCTTTAAGTTCAATTCTGTCCATTTCC
ACTCTTATTTTTTCAACTTGTACGCTTTCCCTACTTTTTGCGACCTTTAT
TTCTTCTTCTCTTCGTTTTCCCCCCCCTTTTTCCTCATCCTTATTCACAT
TATCTTCCTTTCCTCTCTTTTAACCTTCTTCTTTCCTTTCTCCTCTACCT
CCTCTATATCTCCTTTATTTCTTCCTCTCTTTTTCTTCTTTTCTTTTTTT
CTTACCTTTCTTCTTTCTAATTCTTTTACTTCTTCCT

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAACTAGGTTATTCAGAATAAGTTT
AGTCAAAGAACAAGACACAAGCTTAAGATGCAGTTATTCCACTTTGTTAC
TTTTAAAAGTTTTATGCAATGTTCTACTTGCAAAAGGCCCTAGTGTAACG
ATTTTCTCCCATATCTAAGTCTGTGAGAATTTTCTAGACTTTGAGTGTGC
ATATTTCTGTGTGGATTGTATATATGTGTGCAAGTGCATATGTTCAAGTC
TGTTTATGTGAACATAGAGGGCAGAGGGTGATGTCAAGATTATTCTTTTT
GCACTTATATAAGAAATGATATTAACTTAATATTGTAATGCCAATGCAAA
GGGCATTTATGTAAAAAGATTTAATCACCAACTCTTTTTATATTGCATAC
TTATATTTCATAAAAACTTTAGAACAAACCAACACCAATATTTTTTCATC
TTACTAGTTCAATTTTCATGAGAAATATTGTATTTCACTTTTTGTTAATA
AACATGTGTCACAACTCCATCTGTTTTTTTAAATCCCCTTTTTCAAAGGA
CGGGCATTTATGGAACGGGATTTCTTTTTTTTTGGATTAAGAACCTCCCT
TTTTCTAAACATCTGTTGGTTCTCCTCGGGGAAAACCTTTTTTATTTGCT
GCCCTGAATAATCTTTTTCTTTTTTCCCGAATATCCCTTCCTTCCTCCTT
TTGATTTTTCTCATATCACNCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_j17.b1 MSMg01no432_j17.b1 CHROMAT_FILE:
MSMg01no432_j17.b1 PHD_FILE: MSMg01no432_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:23 2005
         (395 letters)



>mm_chr5_80716750_80717544
          Length = 795

 Score =  741 bits (383), Expect = 0.0
 Identities = 392/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgattgtgggatggcaaccacagactatggcataatttttcacatattgaatacttagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tgattgtgggatggcaaccacagactatggcataatttttcacatattgaatacttagtt 536

                                                                       
Query: 61  tttgtttactttgtgtcattaaaattaaagaaacaaggacaatattagtttatatttata 120
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 535 tttgtttactttgtttcattaacattaaagaaacaaggacaatattagtttatatttata 476

                                                                       
Query: 121 gtttgttcattcttgttgcagtcatagaatttcactttattataccagaagtaattatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtttgttcattcttgttgcagtcatagaatttcactttattataccagaagtaattatgg 416

                                                                       
Query: 181 cacactaatatttgtataaattttcttgagttattttaagaataggagggaacaaaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cacactaatatttgtataaattttcttgagttattttaagaataggagggaacaaaaata 356

                                                                       
Query: 241 tacagaacacttgtttaacaaacaagtcatgagtttggattgaagtctacatcaaaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tacagaacacttgtttaacaaacaagtcatgagtttggattgaagtctacatcaaaattt 296

                                                                       
Query: 301 tctcatgtacaaataatgaatattttgcttgattccagtttttattcaatgcggagatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 295 tctcatgtacaaataatgaatattttgcttgattccagtttttattcaatggggagatat 236

                                              
Query: 361 aacaagtatatgtttcttcaaaaccatgcttaaag 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 aacaagtatatgtttcttcaaaaccatgcttaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no432_j17.g1 MSMg01no432_j17.g1 CHROMAT_FILE:
MSMg01no432_j17.g1 PHD_FILE: MSMg01no432_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:23 2005
         (406 letters)



>mm_chr5_80579800_80580605
          Length = 806

 Score =  777 bits (402), Expect = 0.0
 Identities = 405/406 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactaggttattcagaataagtttagtcaaagaacaagacacaagcttaagatgcagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactaggttattcagaataagtttagtcaaagaacaagacacaagcttaagatgcagtt 260

                                                                       
Query: 61  attccactttgttacttttaaaagttttatgcaatgttctacttgcaaaaggccctagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attccactttgttacttttaaaagttttatgcaatgttctacttgcaaaaggccctagtg 320

                                                                       
Query: 121 taacgattttctcccatatctaagtctgtgagaattttctagactttgagtgtgcatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacgattttctcccatatctaagtctgtgagaattttctagactttgagtgtgcatatt 380

                                                                       
Query: 181 tctgtgtggattgtatatatgtgtgcaagtgcatatgttcaagtctgtttatgtgaacat 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tctgtgtggattgtatatatgtgtgcaagtgcatatgttcaagtctgtctatgtgaacat 440

                                                                       
Query: 241 agagggcagagggtgatgtcaagattattctttttgcacttatataagaaatgatattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagggcagagggtgatgtcaagattattctttttgcacttatataagaaatgatattaa 500

                                                                       
Query: 301 cttaatattgtaatgccaatgcaaagggcatttatgtaaaaagatttaatcaccaactct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttaatattgtaatgccaatgcaaagggcatttatgtaaaaagatttaatcaccaactct 560

                                                         
Query: 361 ttttatattgcatacttatatttcataaaaactttagaacaaacca 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttatattgcatacttatatttcataaaaactttagaacaaacca 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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