Query= MSMg01no432_k15.b1 MSMg01no432_k15.b1 CHROMAT_FILE:
MSMg01no432_k15.b1 PHD_FILE: MSMg01no432_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:28 2005
(489 letters)
>mm_chr5_150616353_150617241
Length = 889
Score = 897 bits (464), Expect = 0.0
Identities = 480/488 (98%), Gaps = 5/488 (1%)
Strand = Plus / Plus
Query: 7 ggaattcttttgccatccacggttaggaagctttctttgtggctcctatgactcaaaagc 66
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcttttgccatcgacagttaggaagctttctttgtggctcctatgactcaaaagc 266
Query: 67 caccaccctatgacctacttttatggctacttttgggacttttcaaaggtcagagtgcat 126
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caccaccttatgacctacttttatggctacttttgggacttttcaaaggtcagagtgcat 326
Query: 127 ctgccaaaaaatacaaaatctggcttttgagtcgaagggtaatggctctccctcccccag 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctgccaaaaaatacaaaatctggcttttgagtcgaagggtaatggctctccctcccccag 386
Query: 187 caggctctggcaggacccatcctcgtgggcgcagattccaagtctacatactgctccgtt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 caggctctggcaggacccatcctcgtgggcgcagattccaagtctacatactgctccgtt 446
Query: 247 gctgtcaccaccaattacaaatctaccaagccagtgtgaactgaattcagtgagaacaaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gctgtcaccaccaattacaaatctaccaagccagtgtgaactgaattcagtgagaacaaa 506
Query: 307 gtgaggacaaatggcattattttcaaatagtaaccctggctcaagctttccagttctgga 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtgaggacaaatggcattattttcaaatagtaaccctggctcaagctttccagttctgga 566
Query: 367 cacactggaacctggaacctagtctgtctttgttttgtttccttcttttcttttctttcc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cacactggaacctggaacctagtctgtctttgttttgtttccttcttttcttttctttcc 626
Query: 427 tttcctttcctttctttcctcttcttctcccttct-----ttcacctcctcctccttttc 481
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 627 tttcctttcctttctttcctcttcttctcccttctcttctttcacctcctcctccttttc 686
Query: 482 ttccttct 489
||||||||
Sbjct: 687 ttccttct 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no432_k15.g1 MSMg01no432_k15.g1 CHROMAT_FILE:
MSMg01no432_k15.g1 PHD_FILE: MSMg01no432_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:28 2005
(285 letters)
>mm_chr5_150678740_150679424
Length = 685
Score = 354 bits (183), Expect = e-102
Identities = 246/271 (90%), Gaps = 8/271 (2%)
Strand = Plus / Minus
Query: 1 attacctgctcagtgtcaacacaagggaaccagggatagatcccagtctggggatgcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 attacctgctcagtgtcaacacaagggaaccagggatagatcccagtctggggatgcaag 299
Query: 61 cctggaactacaggagagcccctgtatgagtctatggaaaggacaaagaagctacagtct 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 298 cctggaactgcaggagagcccctgtatgagtctatggaaaggacaaagaagctgcagtct 239
Query: 121 ggtggtggcaggacatggctacaaacacccatgcacctgaaagaaagaaagaaaaaaaga 180
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 238 ggtggtggcaggacatggctacaaacacccatgcacctcaaagaaagaaagaaa----ga 183
Query: 181 aagaaagagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaagg 240
|||||||| |||||||||||||||| ||| ||| ||| ||| ||| ||| ||| |||
Sbjct: 182 aagaaaga----aagaaagaaagaaagagagagagagagagagagagagagggagggagg 127
Query: 241 aaggaaggaaggaaggaaggaaggaaggaag 271
||| ||| ||| ||| ||| ||||||||||
Sbjct: 126 gagggagggagggagggagggaggaaggaag 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
