BAC Information

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BAC

Clone NameMSMg01-432O03
Chromosome5 (Build37)
Map Location 34,819,943 - 34,820,254
singlet/doubletsinglet
Overlap geneBC037112
Upstream gene2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4
Downstream geneLOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432O03.T7 (MSMg01no432_o03.b1)MSMg01-432O03.TJ (MSMg01no432_o03.g1)
ACCAG524796AG524797
length807818
length of high quality
(start - end)
312 (62 - 373)71 (70 - 140)
definitionCHROMAT_FILE: MSMg01no432_o03.b1 PHD_FILE: MSMg01no432_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:47 2005CHROMAT_FILE: MSMg01no432_o03.g1 PHD_FILE: MSMg01no432_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCAAGA
CCTTTCTCATGTACAAACTGAAGTTGTTTTTAAAAAGCTCCAAAAGAAAA
ACAGAAATGACAGACAAGAAAAAAAGGACTACAGTATTGCTGAGAGTTGT
GGCACATGACTTTTTAATCCAGTCATTCAGGAGGTAGAGGCAAACAGATC
TCAAGTGATTTTGAGACCAGCCAAGACAAATGTTGATAAGATATTTGTGA
TAGAAACAAAACAAAAACCAAATAGAACATGAGTATTGACCAGTGAAGAA
CCAACCAACTGGTAAACTGGTATACTCTTAAGAATGGGATGGCTGTTCTT
GGTTGTAAGTTTGACTACCAGTTGTAGGTAATACAGTATTAGGTAAGACC
CAGGTGTATGGATACAGCTCTGACGGGATGTTGGCTTAACTAAATTATTT
TATTGTGTTCTTTATCCTCTTGTCCTTTGTCTCATCTATTGTTGGTTGTC
TTTTTATAGATTTTTTAAGTTTCTCAGTTCCCTTTCCCTTGTCGCTTTTC
TCTTCTATTTCTGTTGCCTCTTTTTTCGTTTCTATTCCCTTTCTTTTATC
TCTTCGCTCGCCTTCTTTTCCTCTTATCATGTTCTCCCCGTCTTCCTCCT
TTTTTTCCCTCTTTTTTTCTCTCTCCCTTCTTTTTTTCTTTATTCCTCCT
TTTATACCTCTTTTTTTTTTTTCTCTTCCTCCCGTTTTTTTTTTTTTACT
CCTTTCTTCTTTTTTCTCTCTTTCTTATTCTCCATTCTTTTATTTTTCTT
TTTCCTT
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXANAAGTGCAACCATCCAAGTCCTGCAGTANGAAA
CAAAGCAAAATTGGAAGTACGCTGAGATAAGTGTGCTGGNTATTGNAGTA
TTANCATAGTCCTGTTTCTCTGAATGCTACACTTACTTGNAGGTACACNA
ACGGCTGGTGCAGCGTCTCTGGACCAGGCGGGTCNNAGCGGGGGCGCGGG
GGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGAGCGGGG
GAACCACCACCTTTTNANNNNNNNNNTTCCCCNNCCCCAAAACTAAACCC
CCCCCCCCCAANCCCCCCAAACAACAAAAAAANNCCACACCCCCCCCCCC
CCTTAANNAACAAAACCCCTTTCCCCCTNCCCTTCCNCNCCCCCCCCCCC
CCCCCCCCCCCCTTTTNNNNCNCNCCCTCCCCCCCCNCCTTCCCCCCCCT
CCCCCCCCCCCCCCCCCCTCCCCCCCTCCNCCCCNCCCCTCTCCCCCCCC
TCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCTCCTCTCCTNCCTCTT
CCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCNCCCCCCTCCCCTTCC
CCCCCCCCCCCTCTTTCCCCCCCCCCCCCCNTCCCCCCCCCCCCCCCCCC
CTCCCCCCCTCCCCCCCANNCCCNTCCCACCCCCACCCCCTCACCCCCCC
CTTCCCCNNCCCCCCCCCCCCCCTCCCTCCCCCCAACTCCCCTCTTCTTC
TTTCTTATTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_o03.b1 MSMg01no432_o03.b1 CHROMAT_FILE:
MSMg01no432_o03.b1 PHD_FILE: MSMg01no432_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:47 2005
         (312 letters)



>mm_chr5_34819743_34820454
          Length = 712

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacaaactgaagttgtttttaaaaagctccaaaagaaaaacagaaatgacagacaagaaa 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacaaactgaagttgtctttaaaaagctccaaaagaaaaacagaaatgacagacaagaaa 260

                                                                       
Query: 61  aaaaggactacagtattgctgagagttgtggcacatgactttttaatccagtcattcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaggactacagtattgctgagagttgtggcacatgactttttaatccagtcattcagg 320

                                                                       
Query: 121 aggtagaggcaaacagatctcaagtgattttgagaccagccaagacaaatgttgataaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtagaggcaaacagatctcaagtgattttgagaccagccaagacaaatgttgataaga 380

                                                                       
Query: 181 tatttgtgatagaaacaaaacaaaaaccaaatagaacatgagtattgaccagtgaagaac 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tatttgtgatagaaacaaaacaaaaaccaaatagaacgtgagtattgaccagtgaagaac 440

                                                                       
Query: 241 caaccaactggtaaactggtatactcttaagaatgggatggctgttcttggttgtaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaccaactggtaaactggtatactcttaagaatgggatggctgttcttggttgtaagtt 500

                       
Query: 301 tgactaccagtt 312
           |||| |||||||
Sbjct: 501 tgacaaccagtt 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)