BAC Information

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BAC

Clone NameMSMg01-432O07
Chromosome5 (Build37)
Map Location 126,056,937 - 126,057,392
singlet/doubletsinglet
Overlap geneTmem132b
Upstream gene4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs
Downstream geneEG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432O07.T7 (MSMg01no432_o07.b1)MSMg01-432O07.TJ (MSMg01no432_o07.g1)
ACCAG524804AG524805
length804745
length of high quality
(start - end)
218 (76 - 293)460 (76 - 535)
definitionCHROMAT_FILE: MSMg01no432_o07.b1 PHD_FILE: MSMg01no432_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:48 2005CHROMAT_FILE: MSMg01no432_o07.g1 PHD_FILE: MSMg01no432_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAGAGGATCCGC
GGAATTCCATGGTTTTCCCAAATCCAAAGTCCCCAAATCCACATTCTTCC
CAGCAAAAGCATGGTCAGGTCTATCACAGCAATACCCCAATCCTTGTACC
AACTTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACTGTGACCAAGGC
AACTCTTATAAAGACCAGGCCAGGCAGTGGTAGTACATGCCTTTAATCCC
AGCACCTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTGGAGGCCAGCCTG
TTCTACAGAGTGAGTGTCAGGTTTTTTCTTTTTATACAGAGAAACCCTGT
CCTTGAAAAACCATATAAACACTTAAAGAAAGACTACATCTCAATCGGGG
TGGCTGGATTACGGGGTCGTACCCTCTAACCAGGGTGTTATTATTGGTTG
TTGCACGGTGAATATTGATAGTTTTTGATTGGTAAGCTCCATTTTTCTTT
AATCTTTCCACTGTCAGTTCTCTGTTTCATTTCTTCTTCTTTTTTACTTT
TCCTTCCTCTACTTCTTCCTATTCTTTTTGCGTACTTTCTATTCTCTCTA
CTCCTATTTTTCTTTTTACTAATTTCTCCCCACTATTCTCCATTTTTTCT
GTCCTTTATTCTTCTCTCTCCTTTTTTCTCTCCTTTTCCCATTCTTTTCC
CTTTTTGTTTTTCAATTCCCTTAGTTACTTTTTATTTTTCTACCTCTCCA
TCATTTTTTTTACTCTCTCTTTTATCTCTAACAATATTTTTTTCTTTTTA
CCTA
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTCCCGAGGCACTGGGTAGCTGCA
CCTGGCCTGAGGCAGCTGCCAAGCTTAGAAACACTAAGTGGTGGCGCCAA
CCTGGGGGAGCCGCCAAGGAACAGCAAATAGACTCAGAGGTAGATCTCGA
AACCCGGGGTCCTGCAGAAAGCACGTCTGGCTTCCAGGCTGAGGCCACTG
AAACATAGGAGGGGGAGGACTGCAGGGCCACAGAGAACCCAATTAATTCC
ATCAGCTGGTGAAGCATACCAGCTCACTAGTTAAAAAGGTAGGGAGAGCT
CGGAATAGTCTCTTCTAAGCAAAGCCCCCAGCGGCAGCGGCAGTGTAGGA
AGATTGCCAAGGTGACAAAATAAACAGCTCCGCGAGATGCAGGAGGGACG
CTGATCTTACCTCCCCACTGCTGTATGATGCCCAGAANATTCTTGCTCTC
TCTGAGCCTCTTTTACTTCTCTTCTCAACTTAATGTTTAAAGTGTTAATT
TTAAAGGTTTAAGTGTGTTGAAAAAATGAAAAGTTTCCCCGTGTAACATT
TTTTAAAATTGAAGATTTTTAAATGTTTTTTTTCTTTCTCTAATTTTCTC
TTGGTGGGCCCAAATTTCTATAAAAACTTCCGGTTATTGAATGTGTCGTT
TGTATTTTTGGTAACACTCTAATCTTAGCCTTCCTTCGCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_o07.g1 MSMg01no432_o07.g1 CHROMAT_FILE:
MSMg01no432_o07.g1 PHD_FILE: MSMg01no432_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:48 2005
         (460 letters)



>mm_chr5_126056733_126057592
          Length = 860

 Score =  876 bits (453), Expect = 0.0
 Identities = 455/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ccgaggcactgggtagctgcacctggcctgaggcagctgccaagcttagaaacactaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ccgaggcactgggtagctgcacctggcctgaggcagctgccaagcttagaaacactaagt 601

                                                                       
Query: 65  ggtggcgccaacctgggggagccgccaaggaacagcaaatagactcagaggtagatctcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ggtggcgccaacctgggggagccgccaaggaacagcaaatagactcagaggtagatctcg 541

                                                                       
Query: 125 aaacccggggtcctgcagaaagcacgtctggcttccaggctgaggccactgaaacatagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aaacccggggtcctgcagaaagcacgtctggcttccaggctgaggccactgaaacatagg 481

                                                                       
Query: 185 agggggaggactgcagggccacagagaacccaattaattccatcagctggtgaagcatac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agggggaggactgcagggccacagagaacccaattaattccatcagctggtgaagcatac 421

                                                                       
Query: 245 cagctcactagttaaaaaggtagggagagctcggaatagtctcttctaagcaaagccccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cagctcactagttaaaaaggtagggagagctcggaatagtctcttctaagcaaagccccc 361

                                                                       
Query: 305 agcggcagcggcagtgtaggaagattgccaaggtgacaaaataaacagctccgcgagatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agcggcagcggcagtgtaggaagattgccaaggtgacaaaataaacagctccgcgagatg 301

                                                                       
Query: 365 caggagggacgctgatcttacctccccactgctgtatgatgcccagaanattcttgctct 424
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 300 caggagggacgctgatcttacctccccactgctgtatgatgcccagaaaattcttgctct 241

                                               
Query: 425 ctctgagcctcttttacttctcttctcaacttaatg 460
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctctgagcctcttttacttctcttctcaacttaatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)