BAC Information

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BAC

Clone NameMSMg01-433J01
Chromosome5 (Build37)
Map Location 4,261,427 - 4,261,863
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
Downstream geneFzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433J01.T7 (MSMg01no433_j01.b1)MSMg01-433J01.TJ (MSMg01no433_j01.g1)
ACCAG525318AG525319
length710838
length of high quality
(start - end)
484 (45 - 528)---
definitionCHROMAT_FILE: MSMg01no433_j01.b1 PHD_FILE: MSMg01no433_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:41 2005CHROMAT_FILE: MSMg01no433_j01.g1 PHD_FILE: MSMg01no433_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTATTTCCCAACAGCAGCAACAACAACAACAACAGCAAAAGCAG
CAGCAACAACAACTATTCTTTGAGGAATCAGAGTCACCTGTATTAATTTG
TCTGCCCTTACTAGATCGACATCTTTCCTTCCCTTGCACACTTACACATT
CTATGCAGACAGGCTGTCTTACATCCTAAGGGTCTGAAGCTGTATCTGAC
TGCTGGGGAGAGAAAGCCCAACATGATCCTTCCTAGACTGGAGTTCCCTG
AGGAAGTGTCAGTGTAGACAGTGACATGCTTGCTCTGTGAGCTTAGCCAG
GCCAGCTCTGTCTCTGTACTCTCCTTTCCTCTTATCATCTCACCCCTGCA
GTCAGACCATGCTTACCCTCCACCTCTGTGGGAAGAACAGGAATTTTACG
TATAATTCTGAACATAATGTTAGCTGTCTGGTACATAAACAATATGGAAT
CTTTATAGCAACTGTTTTGAGCAGCCTTAGCCAGTAGGCTTCTTCAGGGC
AGAACCTGCTATTTTTTGTTGGCGGCTGGTTGGCCTCGCCCTTTCTCCCT
TCCCCCCCTTTTCCCTCTTTCTTCTTCTCCTTTTTCCTTTCTTTCTCTCC
ACCTTTTTTCCCCCTTTCTTTACCCCCCCCCCCTTTTCCTCTCCTCCTCC
CTCTTCTCGG
ACAAAAGGTTNNNNNTTNNNNCCCCCCCTTCCCCCCTTTGCCCCTTTTCC
AAAATTTCCCCCAAATATATTCTGAGAATAAATCCCGGGTTTTTTTTTCT
TNTTNTAATTATTTTCATAATCTCTTCATATTCATATACTAAAAAACACC
TGTTCGAACATTCTGCGACATGCTCTTGATACAATAATTTTCCCTTTCAA
CAAAGAAAGACTCCATCTTTTTCCCCCTTTTCAAATTAAAGATCCTACTT
TCCCCTTCTCCCCTTCTTCCTTCTTTTTTATTTATATCTTTCTTCTTTTT
CTTAAGCATAGTTGTGGTTGTGGGGGGGGGGGGCGCGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCCATTTAATTTNNTTTT
ATTTTTTTTTTGTGGGCGAGGNNNNCCGNNNNNNATNNNAAAANTTTTTG
GTGGGAGGGGGGGTGGGGGGGGCGGGGGGGGGGGGGCGGGGGGGGGGGTG
GGGGAAANAAACCNNNNNTNTTTTNATTTTTTTTTTATTTATAATCGTTN
NNATNTATAATTNTTAAATAATANNNGGGCGGGGGGGGGGGGGGGGGGGG
GGGGGATNCCGNTTNNNATTTTNTNTNATTTTATTTTTCCTTTANTTTTC
CATAATAATTTACTTTNTTNNTCTCCGCCNTNTCCCNTTTTTATACATTC
TAACTTATATCTTTTTCCCGTCTTTCNACTCTTTTTATTTTTNATTTACC
TCCTTCCTCCTTCACCCACATCTCTATTTTTACCTACTTCTCTTGATGTT
CGCGCGGGGCGGTGGGGGGGGGGTAGGGGGGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_j01.b1 MSMg01no433_j01.b1 CHROMAT_FILE:
MSMg01no433_j01.b1 PHD_FILE: MSMg01no433_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:41 2005
         (484 letters)



>mm_chr5_4261158_4262036
          Length = 879

 Score =  774 bits (400), Expect = 0.0
 Identities = 432/448 (96%), Gaps = 11/448 (2%)
 Strand = Plus / Minus

                                                                       
Query: 37  aacaacaacagcaaaagcagcagcaacaacaactattctttgaggaatcagagtcacctg 96
           ||||||||||||   ||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 706 aacaacaacagc---agcagcag---caacaactattctttgaggaatcagagtcacctg 653

                                                                       
Query: 97  tattaatttgtctgcccttactagatcgacatctttccttcccttgcacacttacacatt 156
           ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||
Sbjct: 652 tattaatttgtctgcccttactagatcgacatcttt-----ccttgcacacttacacatt 598

                                                                       
Query: 157 ctatgcagacaggctgtcttacatcctaagggtctgaagctgtatctgactgctggggag 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctatgcagacaggctgtcttacatcctaagggtctgaagctgtatctgactgctggggag 538

                                                                       
Query: 217 agaaagcccaacatgatccttcctagactggagttccctgaggaagtgtcagtgtagaca 276
           ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agagagcccaatatgatccttcctagactggagttccctgaggaagtgtcagtgtagaca 478

                                                                       
Query: 277 gtgacatgcttgctctgtgagcttagccaggccagctctgtctctgtactctcctttcct 336
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtgacacgcttgctctgtgagcttagccaggccagctctgtctctgtactctcctttcct 418

                                                                       
Query: 337 cttatcatctcacccctgcagtcagaccatgcttaccctccacctctgtgggaagaacag 396
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 417 cttatcatctcacccctgcagtcagaccatgcttactctccacctctgtgggaagaacag 358

                                                                       
Query: 397 gaattttacgtataattctgaacataatgttagctgtctggtacataaacaatatggaat 456
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 357 gaattttacgtataattctgaacataatgttagctgtctggtacataaacaatacggaat 298

                                       
Query: 457 ctttatagcaactgttttgagcagcctt 484
           ||||||||||||||||||||||||||||
Sbjct: 297 ctttatagcaactgttttgagcagcctt 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 879
Length adjustment: 10
Effective length of query: 474
Effective length of database: 869
Effective search space:   411906
Effective search space used:   411906
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)