Query= MSMg01no433_p19.b1 MSMg01no433_p19.b1 CHROMAT_FILE:
MSMg01no433_p19.b1 PHD_FILE: MSMg01no433_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:15 2005
(385 letters)
>mm_chr5_107128087_107128871
Length = 785
Score = 667 bits (345), Expect = 0.0
Identities = 376/397 (94%), Gaps = 18/397 (4%)
Strand = Plus / Minus
Query: 7 gaattcacaatttgaaggcattattgatagtgatggggtctatttgggtgaattaggtca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaattcacaatttgaaggcattattgatagtgatggggtctatttgggtgaattaggtca 501
Query: 67 ctgaggtgttccttggaagagtggatctcgactctgaccccatctttccattctttctac 126
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgaggtgttccttggaagagtggacctcgactctgaccccatctttccattctttctac 441
Query: 127 cttctggttctgacgtgatggctagtttttctggcagtgactggtgactttgcaccgtgt 186
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 cttctggttctgacgtgatggctagtttttctggcagtgactggtgactttgcaccatgt 381
Query: 187 ttctgccattctctaatctggcagtggatccagttaaccatggactaacactgcgagcta 246
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 ttctgccattctctaatctggcagtggagccagttaaccatggactaacactgcgagcta 321
Query: 247 agaacagtcctctcctctcttaaattgtttccttgtggtattttgaaattaacaaaacta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaacagtcctctcctctcttaaattgtttccttgtggtattttgaaattaacaaaacta 261
Query: 307 acaggtccttctgtgtgcactgcttcaacgttctacgtgtaaggttccctgg-------- 358
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acaggtccttctgtgtgcactgcttcaacgttctacgtgtaaggttccctggctcagtgt 201
Query: 359 --ctt--------catccgagtttgagatgctaaaga 385
||| ||||||||||||||||||||||||
Sbjct: 200 tcctttctctcagcatccgagtttgagatgctaaaga 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_p19.g1 MSMg01no433_p19.g1 CHROMAT_FILE:
MSMg01no433_p19.g1 PHD_FILE: MSMg01no433_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:15 2005
(408 letters)
>mm_chr5_106991798_106992603
Length = 806
Score = 717 bits (371), Expect = 0.0
Identities = 396/405 (97%), Gaps = 2/405 (0%)
Strand = Plus / Plus
Query: 4 ttttaaaactggggtgtcaaacaattacaaagagattgggaaattccgtttctttcagta 63
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 204 ttttaaaactggggtgtcaaacaattacaaagagattgggaaattctgtttcttccagta 263
Query: 64 atgcatgtcatatttcacatatagtgcatggcataattttctgttataagaaaatttatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgcatgtcatatttcacatatagtgcatggcataattttctgttataagaaaatttatg 323
Query: 124 gaaatccggcactgtatggcaaggccatgtggtagcaggtgtgactgtctcttctctagg 183
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 gaaatccggcactgtatggcaaggccatgtggtagcaggtgtgattgtctcttctctagg 383
Query: 184 ttttaagtgtggttctagaataaacttggcccagtcaggcaaattacaaattatttgtta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttaagtgtggttctagaataaacttggcccagtcaggcaaattacaaattatttgtta 443
Query: 244 atttgaacttctaaatctatatctgtttatatgtaatccagcctaaaatcaggagaaatt 303
|||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct: 444 atttgaacttctaaatctatgt--gtttatatataatccagcctaaaatcaggagaaatt 501
Query: 304 ctaagggggccttggcactgcagtgtacttcacctcctggcgacagcctaggatatgcca 363
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctaagggagccttggcactgcagtgtacttcacctcctggcgacagcctaggatatgcca 561
Query: 364 ctcttccacctcttgtggcttctcctatgctttactggggtctga 408
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 562 ctcttccacctcttgtggcttctcctatgttttactggggtctga 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 806
Length adjustment: 9
Effective length of query: 399
Effective length of database: 797
Effective search space: 318003
Effective search space used: 318003
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
