MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-434A16
Chromosome	5 (Build37)
Map Location	75,693,755 - 75,694,167
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Scfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125
Downstream gene	LOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Scfd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212986 MGI:2443446
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fip1l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66899 MGI:1914149
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lnx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16924 MGI:1278335
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG619945 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:619945 MGI:3644088
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Chic2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74277 MGI:1921527
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gsh2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14843 MGI:95843
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039083 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039083
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Olfr1401-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:404510 MGI:3031235
definition	note : olfactory receptor 1401, pseudogene 1 pseudo : _no_value

name	Pdgfra (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18595 MGI:97530
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100039125 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC100039143 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039143
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100039158 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039158
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	LOC100039169 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039169
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Kit (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16590 MGI:96677
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG664874 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664874 MGI:3643740
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Kdr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16542 MGI:96683
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gabarapl2-ps5_758.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606516
definition	note : GABA(A) receptor-associated protein-like 2 pseudogene 5_758.1 pseudo : _no_value

name	Srd5a2l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57357 MGI:1930252
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem165 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21982 MGI:894407
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Apc-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:79189 MGI:1930261
definition	note : adenomatosis polyposis coli, pseudogene 1 pseudo : _no_value

name	Clock (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12753 MGI:99698
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ube2n-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12067 MGI:894296
definition	gene_synonym : 1500026J17Rik; Benh-ps1 note : ubiquitin-conjugating enzyme E2N, pseudogene 1 pseudo : _no_value

name	Scfd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803222 GeneID:212986 MGI:2443446
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sec1 family domain containing 2 transcript_id : NM_178672.4

name	Fip1l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802634 GeneID:66899 MGI:1914149
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FIP1 like 1 (S. cerevisiae) transcript_id : NM_024183.4

name	Lnx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803103 GeneID:16924 MGI:1278335
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ligand of numb-protein X 1 transcript_id : NM_010727.3

name	Chic2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376381 GeneID:74277 MGI:1921527
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cysteine-rich hydrophobic domain 2 transcript_id : NM_028850.2

name	Gsh2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130994 GeneID:14843 MGI:95843
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : genomic screened homeo box 2 transcript_id : NM_133256.2

name	Pdgfra (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134032049 GeneID:18595 MGI:97530
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : platelet derived growth factor receptor, alpha polypeptide transcript_id : NM_011058.2

name	LOC100039125 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253963 GeneID:100039125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100039125 transcript_id : XM_001472317.1

name	Pdgfra (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134032015 GeneID:18595 MGI:97530
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : platelet derived growth factor receptor, alpha polypeptide transcript_id : NM_001083316.1

name	LOC100039143 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253965 GeneID:100039143
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039143 transcript_id : XM_001472343.1

name	Kit (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10947120 GeneID:16590 MGI:96677
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kit oncogene transcript_id : NM_021099.2

name	EG664874 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374816 GeneID:664874 MGI:3643740
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG664874 transcript_id : XM_973184.1

name	Kdr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27777647 GeneID:16542 MGI:96683
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinase insert domain protein receptor transcript_id : NM_010612.2

name	Srd5a2l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27881426 GeneID:57357 MGI:1930252
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : steroid 5 alpha-reductase 2-like transcript_id : NM_020611.3

name	Tmem165 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111154066 GeneID:21982 MGI:894407
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 165 transcript_id : NM_011626.2

name	Clock (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131173 GeneID:12753 MGI:99698
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : circadian locomoter output cycles kaput transcript_id : NM_007715.5

name	Scfd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982305 CCDS:CCDS19345.1 GeneID:212986 MGI:2443446
definition	GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0006904 - vesicle docking during exocytosis [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence IEA] codon_start : 1 product : sec1 family domain containing 2 protein_id : NP_848787.2

name	Fip1l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560210 CCDS:CCDS19346.1 GeneID:66899 MGI:1914149
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA] codon_start : 1 product : FIP1 like 1 protein_id : NP_077145.2

name	Lnx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981642 CCDS:CCDS19347.1 GeneID:16924 MGI:1278335
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0030165 - PDZ domain binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0051260 - protein homooligomerization [Evidence IDA]; GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolism [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IDA] codon_start : 1 exception : mismatches in translation product : ligand of numb-protein X 1 protein_id : NP_034857.2

name	Chic2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386358 CCDS:CCDS19349.1 GeneID:74277 MGI:1921527
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0005798 - Golgi-associated vesicle [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_process : GO:0006893 - Golgi to plasma membrane transport [Evidence TAS] codon_start : 1 product : cysteine-rich hydrophobic domain 2 protein_id : NP_083126.1

name	Gsh2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18921210 CCDS:CCDS19350.1 GeneID:14843 MGI:95843
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007420 - brain development [Evidence IGI]; GO:0007417 - central nervous system development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0048665 - neuron fate specification [Evidence IMP]; GO:0007389 - pattern specification [Evidence IMP] [Evidence IGI]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : genomic screened homeo box 2 protein_id : NP_573555.1

name	LOC100039125 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253964 GeneID:100039125
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472367.1

name	Pdgfra (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134032016 GeneID:18595 MGI:97530
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0048407 - platelet-derived growth factor binding [Evidence IDA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004714 - transmembrane receptor protein tyrosine kinase activity [Evidence IEA]; GO:0005021 - vascular endothelial growth factor receptor activity [Evidence IEA] GO_process : GO:0030198 - extracellular matrix organization and biogenesis [Evidence IMP]; GO:0030324 - lung development [Evidence IMP]; GO:0030539 - male genitalia development [Evidence IMP]; GO:0009653 - morphogenesis [Evidence IMP]; GO:0042475 - odontogenesis (sensu Vertebrata) [Evidence IMP]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA] codon_start : 1 note : PDGF alpha chain; platelet-derived growth factor receptor alpha product : platelet derived growth factor receptor, alpha polypeptide protein_id : NP_001076785.1

name	Pdgfra (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134032050 CCDS:CCDS19351.1 GeneID:18595 MGI:97530
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0048407 - platelet-derived growth factor binding [Evidence IDA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004714 - transmembrane receptor protein tyrosine kinase activity [Evidence IEA]; GO:0005021 - vascular endothelial growth factor receptor activity [Evidence IEA] GO_process : GO:0030198 - extracellular matrix organization and biogenesis [Evidence IMP]; GO:0030324 - lung development [Evidence IMP]; GO:0030539 - male genitalia development [Evidence IMP]; GO:0009653 - morphogenesis [Evidence IMP]; GO:0042475 - odontogenesis (sensu Vertebrata) [Evidence IMP]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA] codon_start : 1 note : PDGF alpha chain; platelet-derived growth factor receptor alpha product : platelet derived growth factor receptor, alpha polypeptide protein_id : NP_035188.2

name	LOC100039143 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253966 GeneID:100039143
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472393.1

name	Kit (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10863917 GeneID:16590 MGI:96677
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005020 - stem cell factor receptor activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004714 - transmembrane receptor protein tyrosine kinase activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence TAS]; GO:0008283 - cell proliferation [Evidence TAS]; GO:0050875 - cellular physiological process [Evidence TAS]; GO:0006935 - chemotaxis [Evidence TAS]; GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence IDA]; GO:0007281 - germ cell development [Evidence TAS]; GO:0030097 - hemopoiesis [Evidence IMP]; GO:0018108 - peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0016310 - phosphorylation [Evidence TAS]; GO:0048066 - pigmentation during development [Evidence IMP]; GO:0046777 - protein amino acid autophosphorylation [Evidence TAS]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA]; GO:0007243 - protein kinase cascade [Evidence IDA]; GO:0009314 - response to radiation [Evidence IMP]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA] codon_start : 1 exception : mismatches in translation note : c-kit proto-oncogene protein; belly-spot; Steel Factor Receptor; Dominant white spotting; dominant spotting; spotted sterile male product : c-kit protein_id : NP_066922.1

name	EG664874 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374817 GeneID:664874 MGI:3643740
definition	codon_start : 1 product : hypothetical protein protein_id : XP_978278.1

name	Kdr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27777648 GeneID:16542 MGI:96683
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004714 - transmembrane receptor protein tyrosine kinase activity [Evidence IEA]; GO:0005021 - vascular endothelial growth factor receptor activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0045165 - cell fate commitment [Evidence IMP]; GO:0016477 - cell migration [Evidence IGI]; GO:0007275 - development [Evidence IEA]; GO:0045446 - endothelial cell differentiation [Evidence IDA]; GO:0030097 - hemopoiesis [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA]; GO:0001570 - vasculogenesis [Evidence IMP] codon_start : 1 note : vascular endothelial growth factor receptor-2; VEGF receptor-2; vascular endothelial growth factor receptor-3; vascular endothelial growth factor receptor- 2 product : kinase insert domain protein receptor protein_id : NP_034742.2

name	Srd5a2l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27881427 CCDS:CCDS19358.1 GeneID:57357 MGI:1930252
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 note : steroid 5 alpha-reductase 2 like; H5AR product : steroid 5 alpha-reductase 2-like protein_id : NP_065636.2

name	Tmem165 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111154067 CCDS:CCDS19359.1 GeneID:21982 MGI:894407
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence IEA] [Evidence ND] codon_start : 1 note : transmembrane protein 164 product : TPA regulated locus protein_id : NP_035756.2

name	Clock (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7106459 CCDS:CCDS19360.1 GeneID:12753 MGI:99698
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] [Evidence ISS]; GO:0008134 - transcription factor binding [Evidence ISS]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0007623 - circadian rhythm [Evidence IMP] [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0048511 - rhythmic process [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : circadian locomoter output cycles kaput protein_id : NP_031741.1

name	LOC100039083 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039083
definition	number : 1 pseudo : _no_value

name	LOC100039158 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039158
definition	number : 2 pseudo : _no_value

name	LOC100039158 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039158
definition	number : 1 pseudo : _no_value

name	LOC100039169 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039169
definition	number : 1 pseudo : _no_value

name	LOC100039169 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039169
definition	number : 2 pseudo : _no_value

name	LOC100039169 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039169
definition	number : 3 pseudo : _no_value

name	LOC100039169 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039169
definition	number : 4 pseudo : _no_value

name	LOC100039169 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039169
definition	number : 5 pseudo : _no_value

name	LOC100039169 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039169
definition	number : 6 pseudo : _no_value

name	LOC100039169 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039169
definition	number : 7 pseudo : _no_value

name	EG619945 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149253967 GeneID:619945 MGI:3644088
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : predicted gene, EG619945 transcript_id : XR_035406.1

clone name	MSMg01-538F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476N05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-448C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-188G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107H23
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-434A16.T7 (MSMg01no434_a16.b1)	MSMg01-434A16.TJ (MSMg01no434_a16.g1)
ACC	AG525683	AG525684
length	743	727
length of high quality (start - end)	432 (66 - 497)	418 (67 - 484)
definition	CHROMAT_FILE: MSMg01no434_a16.b1 PHD_FILE: MSMg01no434_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:19 2005	CHROMAT_FILE: MSMg01no434_a16.g1 PHD_FILE: MSMg01no434_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:19 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA GCCTGTTTCTCAGTAGTAGCTGAAACTTAGGGCTTGCAGCCTAGGTGCCT ATTTAACATAGGAAAGCTCACCCGGCCTCCAGGTTCTCCCAGCATCCCTC AGTCATCACCTCTTTAAAAGTATGGCTGCCACACACCTCCCTCTATTCTG AACTCTCCAGCCTAGCCCCTGCCTCCCCCAGAGTCTCTTCCCTACTTTGG TTAACTACTTTCTCTGCCCCCCTATTGTGGCTTGGATGCCATACTTGGTC CCCATCTCTCCCTTCCTCTTCCCCTTCCCCTTCCCCTTCCCCTCCCCCCA CATGGTTTATAGTCAGGAGCACTCTGGACTCTCCCAGATGTGTCTGCCTC TGGCTATGTCTCCCTCTATCTAGAGTGAACCTTCTCTTCCACCAGATCTA GGAGTGGTACTGTCCCTTCCTTTCTTCTTCTTCTTTTTTTTTTTTTTTCT TTCCCGAAGCTGAGGCTGGTACATGTGGAAAAGCACATACGCCATTACAA GATGGCGCTGTCTACCGCTGGACATAGCCCCCGTAAGTCCGGGTAATAAA ACAATTGTGCTCAGGTGGTAATAGGTTTTCCCGCCATACCATCATCCCCT CCCCGGTAAATGTTAATTGATGTCACTGTAACGAATAACCCTTACAATGA TTTTGTAACTTCCTTCACTCTCAGCTACCATATTAATTACATG	TGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXACTGAAATCCACCTGTTTTAGCTTCCCAAATGCT GGGAGTTCCAGGTGAGAGCCACTATGCCCTGTGAGCTCACATTTTAGGTC TGAGTATATCAAGCTCTGTGCCTAGATTAAGTAGATGTGTGATTTATCCA AGGACTGCTCTCACTAACATTGCCACTAAAATCATTGGCACATAACAGTT GTGATGATTTAATCTGGATTGTCAATTTGATGAGCTTTAGAATCACCTGA AGATGGGCATCTCCTATGTGAGAGGTTATCTTGATTGGATTGACTAAGAT GGGAGGACCTGTCCACTGTGGGTGGAATCATTCCCTTAGCTGAGACCCAT TTATGCAATGCAGGTTCTCAGGAAGAGAGAGGTGTTTTCATAAGCAATGC CCCAAATCCCACTACAGAAATGACCTGATATGACTGCTGCTTGCTAAACT GGGAACGAAAGGAATTTGACCTCGCCGTCTTCCCTTCCCCTATCGAACTA CTTCTGAGCCTGTAACTTCTGAGTCAGAAATTTGACCTCTTTTGTGAAGG TTACTGTTCCTTACGCTTATTCCCTTGCCCACATCCTCAATAATCCCTTC ATTATTATTTGCTACCTGGCCCATCTGCTTATAATTTTCACTGTCCTAAC TAACCGGTTTCCCCTCTCTCTCTTCTC
quality values	Open. Hide. 25 25 34 32 37 37 33 33 33 33 29 35 30 30 30 35 44 48 31 31 31 30 29 21 21 9 7 7 8 7 7 9 11 10 10 10 11 13 16 18 30 41 30 28 31 31 31 28 33 33 33 27 23 16 11 10 10 17 10 10 10 11 11 11 12 15 15 31 32 43 43 48 57 53 57 57 57 53 50 59 59 59 59 59 57 57 57 50 50 54 59 68 68 68 68 68 59 59 59 68 68 68 68 68 51 51 48 47 47 42 48 43 44 44 47 57 47 48 48 48 57 57 57 57 48 57 57 57 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 59 59 47 43 43 43 57 57 68 68 68 68 68 68 68 68 59 59 59 59 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 57 57 57 57 57 59 59 59 59 59 48 48 59 59 59 59 59 59 59 59 59 59 59 41 30 19 8 8 6 6 6 8 12 12 18 30 41 59 59 50 50 50 57 57 57 59 59 59 59 59 59 59 59 59 59 57 57 59 57 48 48 48 47 47 43 43 43 43 46 57 48 46 46 40 43 43 46 46 57 48 54 54 54 57 57 57 57 54 54 54 57 57 68 68 68 59 59 57 57 57 57 54 54 54 59 59 59 57 57 59 59 59 59 57 46 46 39 48 48 48 59 54 48 48 59 59 59 59 59 59 59 59 59 59 29 28 20 20 20 25 33 37 37 39 40 40 39 41 41 39 39 25 31 28 34 28 30 30 37 37 43 36 35 32 32 30 21 26 19 28 28 25 25 11 11 11 22 23 36 36 37 37 37 37 48 48 48 48 48 48 48 48 48 59 59 59 48 48 48 36 33 25 25 22 30 29 31 24 13 10 9 9 9 9 10 11 10 10 10 11 11 13 21 25 23 23 25 30 30 11 10 10 10 12 14 18 11 10 10 9 9 9 9 8 8 8 10 9 11 12 16 12 16 8 8 10 8 8 8 10 13 18 16 14 12 14 14 16 12 11 11 12 12 12 12 15 11 12 16 16 16 11 10 10 10 10 10 12 12 14 14 19 8 6 8 6 6 8 6 11 11 11 10 9 8 8 8 8 8 8 8 8 10 11 13 8 12 13 7 7 8 8 8 12 8 8 8 10 8 8 8 8 8 8 8 6 8 13 8 8 8 10 8 10 10 14 10 8 8 8 8 8 10 10 10 10 8 8 6 8 8 8 8 8 12 9 6 6 8 8 8 8 8 9 10 8 8 8 8 8 8 10 11 11 11 10 10 10 10 10 10 10 8 6 6 8 6 7 8 9 10 10 10 12 11 11 11 9 8 8 8 8 8 8 8 9 9 8 10 10 13 10 10 16 16 8 8 6 6 8 8 13 18 12 10 8 8 8 8 6 6 6 6 6 8 15 11 8 8 8 8 8 8 8 6	Open. Hide. 6 8 11 6 6 6 8 17 21 39 39 39 44 44 37 37 37 32 32 35 39 18 21 9 6 6 6 6 7 8 17 10 10 10 21 21 37 37 23 21 11 11 11 21 21 37 37 37 26 18 10 6 6 8 8 15 18 15 15 18 15 22 29 29 36 36 36 36 36 57 42 43 43 47 43 43 43 43 50 59 59 59 57 68 68 68 68 68 68 68 47 47 42 47 43 50 59 68 68 68 68 68 68 68 68 59 50 47 47 47 47 47 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 51 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 57 59 57 57 57 59 57 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 48 48 48 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 57 57 57 57 50 53 57 53 50 48 59 47 47 28 28 26 19 16 12 12 12 16 15 25 21 37 34 41 48 48 50 50 50 50 50 42 41 39 44 44 39 39 44 44 44 47 47 42 41 50 50 50 37 37 33 35 35 37 39 43 47 50 50 50 57 57 59 59 59 59 59 59 59 57 54 59 57 57 54 43 44 43 43 43 59 59 59 57 57 59 59 43 44 48 57 57 43 39 36 42 42 57 57 57 57 57 68 57 57 43 43 43 57 47 59 37 37 41 47 44 44 44 36 28 28 28 33 37 37 42 42 37 43 42 42 37 30 30 37 43 38 32 16 16 12 15 11 15 15 28 28 37 44 44 37 32 24 20 20 20 41 30 40 28 28 28 31 28 25 25 29 29 25 25 18 21 10 12 12 19 20 24 33 31 30 24 15 15 15 19 19 18 21 21 22 11 10 8 8 8 8 8 15 18 13 10 10 12 17 19 24 19 22 18 20 23 18 14 12 12 17 14 12 11 11 11 10 11 17 21 15 11 11 21 15 11 9 9 9 9 12 12 18 10 14 7 7 8 8 11 10 10 12 13 21 18 15 19 16 15 8 8 8 8 8 10 11 13 11 11 13 11 12 11 11 10 11 13 11 11 11 8 8 8 9 10 12 14 18 11 11 9 9 9 10 10 15 12 13 10 10 10 10 8 8 6 6 8 8 8 8 8 8 8 13 12 9 6 8 8 10 10 8 8 8 8 13 10 15 10 13 10 10 8 8 7 6 8 8 10 9 9 9 11 12 12 15 9 9 9 11 11 8 8 8 8 8 8 8 8 8 12 17 11 8 8 8 10 11 8 11 11 16 15 14 9 9 6 8 8 8 8 8 8 8 6 6 8 8 13 12 8 6 6 8 8 8 10 8 8 8 8 8 6 7 8 8 9 8 8 8 8 11 14 13 13 13 18 18 18 12 10 8 8 8 8 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no434_a16.g1 MSMg01no434_a16.g1 CHROMAT_FILE:
MSMg01no434_a16.g1 PHD_FILE: MSMg01no434_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:19 2005
         (418 letters)



>mm_chr5_75693555_75694372
          Length = 818

 Score =  758 bits (392), Expect = 0.0
 Identities = 409/416 (98%), Gaps = 3/416 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaaatccacctgttttagcttcccaaatgctgggagttccaggtgagagccactatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaaatccacctgttttagcttcccaaatgctgggagttccaggtgagagccactatg 260

                                                                       
Query: 61  ccctgtgagctcacattttaggtctgagtatatcaagctctgtgcctagattaagtagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctgtgagctcacattttaggtctgagtatatcaagctctgtgcctagattaagtagat 320

                                                                       
Query: 121 gtgtgatttatccaaggactgctctcactaacattgccactaaaatcattggcacataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgatttatccaaggactgctctcactaacattgccactaaaatcattggcacataac 380

                                                                       
Query: 181 agttgtgatgatttaatctggattgtcaatttgatgagctttagaatcacctgaagatgg 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgtgatgatttaatctggattgacaatttgatgagctttagaatcacctgaagatgg 440

                                                                       
Query: 241 gcatctcctatgtgagaggttatcttgattggattgactaagatgggaggacctgtccac 300
           |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gcatctccaatgtgagaggttatcttgattggattgactaagatgtgaggacctgtccac 500

                                                                       
Query: 301 tgtgggtggaatcattcccttagctgagacccatttatgcaatgcaggttctcaggaaga 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 tgtgggtggaatcattcccttagctgagacccatttatacaatgcaggttctcaggaaga 560

                                                                   
Query: 361 gagaggtgttttcataagcaatgccccaaatcccactacagaaatgacctgatatg 416
           ||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 561 gagaggtgttttcataagcaatgc---aaatcccactacagaaatgacctgatatg 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information