BAC Information

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BAC

Clone NameMSMg01-434B22
Chromosome5 (Build37)
Map Location 41,057,622 - 41,267,715
singlet/doubletdoublet
Overlap genenone
Upstream geneHs3st1, EG665839, LOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434B22.T7 (MSMg01no434_b22.b1)MSMg01-434B22.TJ (MSMg01no434_b22.g1)
ACCAG525743AG525744
length737751
length of high quality
(start - end)		519 (38 - 556)432 (70 - 501)
definitionCHROMAT_FILE: MSMg01no434_b22.b1 PHD_FILE: MSMg01no434_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:25 2005CHROMAT_FILE: MSMg01no434_b22.g1 PHD_FILE: MSMg01no434_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,267,200 - 41,267,715)(41,057,622 - 41,058,052)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAT
AACTGTGTATTGTGCTTATTCACTCAGAATTAAGAAGCTAAGATTGCAAG
TGAGTCTGTTGATTTGTCTGCCACCTTTTAATTGAGGTCCAGGCTACCTC
TTCAGAGGGAATATAACATTCACCACAGTTACAAATAACTTGTAATATCA
TCTAGTCGAAATACAGAAATCTAGCTTTATTATAGATAAAATACTGAGAT
GGGAGTCATGCTTATCTGTGAGCTCTTGAAAAGATATTGTCACATGCATC
AGCCAAGGTTTGGCTCACCTGCATCCCATGCTAGATTCTAAGCAAGGTCC
CACACAGTTGCAGTGTTCATTAATACTAAAGGATGCTATCAGTTCTCCCA
AAAACAACAGCATGTGATTGAAAGACCATGGTATTTAAAAGTGTACATAT
GTACATACATACATACATATGTAGCAGAGTATGGCCATATCTGTCATTAA
AGGAGGGGAGGGAGGCTTGATGCCCCACATAGGGGGATGCTAAAGGGGTG
AGGCGGGAGTGGGTAAATGGTTGTTNNNNNNNNNNTNTTNTTTTTTTTTT
NTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTCTTTTTTTTCCNTT
CTTTTTCTTTTNTTTNCTTTNCTTTTTTTTCTTCTTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTGTACCAGAGTCCATTAAAAGATTATTGT
AAGGAACAAGGTAAGAGCTGTTTTGATATTTCTAGTCCATAAACTACATG
GGAAATTACTATTCTATGCCATTGAGCAGACTTAGTACCAAATATGAGCA
GGACCCAGTAAAATTTTATGTCCTAAGACAGGTGATGGGTCACACTTGGC
TTGAGGTTCAAAATTTTGCTGGTCTGCAGTATGCAGGTCATACCATCTCA
TTTTGTCATGGTTAAAGGCACAAGTATGCCATAGAAAATTATATACCCTG
CCAATTACTGATAACCTGGCAAGTTTGAAGGTGTTTAGGGTCCCAAGAAA
TAATAGGACATTTCATTCAAAGTAAAAGTCAGGATGTTTTAGCTTGTACT
TCTATCTGCTAACAAACTGGACCACATATTAGATGGTTCTGTAGATCTTG
NAAATTGTATATCCCAATTTTAGCAATAGAGAGGACTTATTTATTAGGTG
AGTCTTAAGGCAGGTTCCCTTCATAAAAACCTCTGAAGAAAGTTCCGATA
GAAGTTGAAATACATACCTTCCGGAGAAAGTTATCTTTCTTTTATTCCGG
AGGCCCTTAATTGTTATTTCCCCCAGGACGCCATAACACTGGGGGATTAT
ATCCCCGGGGTGTTTCCCCATACTGCGTGATTTTTTGTTTTAATAGCGTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_b22.b1 MSMg01no434_b22.b1 CHROMAT_FILE:
MSMg01no434_b22.b1 PHD_FILE: MSMg01no434_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:25 2005
         (519 letters)



>mm_chr5_41267110_41268028
          Length = 919

 Score =  975 bits (504), Expect = 0.0
 Identities = 513/516 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctataactgtgtattgtgcttattcactcagaattaagaagctaagattgcaag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggaattctataactgtgtattgtgcttattcactcagaattaagaagctaagattgcaag 547

                                                                       
Query: 64  tgagtctgttgatttgtctgccaccttttaattgaggtccaggctacctcttcagaggga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tgagtctgttgatttgtctgccaccttttaattgaggtccaggctacctcttcagaggga 487

                                                                       
Query: 124 atataacattcaccacagttacaaataacttgtaatatcatctagtcgaaatacagaaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atataacattcaccacagttacaaataacttgtaatatcatctagtcgaaatacagaaat 427

                                                                       
Query: 184 ctagctttattatagataaaatactgagatgggagtcatgcttatctgtgagctcttgaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctagctttattatagataaaatactgagatgggagtcatgcttatctgtgagctcttgaa 367

                                                                       
Query: 244 aagatattgtcacatgcatcagccaaggtttggctcacctgcatcccatgctagattcta 303
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aagatattgtcacatggatcagccaaggtttggctcacctgcatcccatgctagattcta 307

                                                                       
Query: 304 agcaaggtcccacacagttgcagtgttcattaatactaaaggatgctatcagttctccca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 306 agcaaggtcccacacagttgcagtgttcattaatactaaaggatgctatcagttctcccc 247

                                                                       
Query: 364 aaaacaacagcatgtgattgaaagaccatggtatttaaaagtgtacatatgtacatacat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaaacaacagcatgtgattgaaagaccatggtatttaaaagtgtacatatgtacatacat 187

                                                                       
Query: 424 acatacatatgtagcagagtatggccatatctgtcattaaaggaggggagggaggcttga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 acatacatatgtagcagagtatggccatatctgtcattaaaggaggggagggaggcttga 127

                                               
Query: 484 tgccccacatagggggatgctaaaggggtgaggcgg 519
           |||||||||||||||||| |||||||||||||||||
Sbjct: 126 tgccccacatagggggattctaaaggggtgaggcgg 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no434_b22.g1 MSMg01no434_b22.g1 CHROMAT_FILE:
MSMg01no434_b22.g1 PHD_FILE: MSMg01no434_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:26 2005
         (432 letters)



>mm_chr5_41057422_41058253
          Length = 832

 Score =  810 bits (419), Expect = 0.0
 Identities = 428/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtaccagagtccattaaaagattattgtaaggaacaaggtaagagctgttttgatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtaccagagtccattaaaagattattgtaaggaacaaggtaagagctgttttgatat 260

                                                                       
Query: 61  ttctagtccataaactacatgggaaattactattctatgccattgagcagacttagtacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctagtccataaactacatgggaaattactattctatgccattgagcagacttagtacc 320

                                                                       
Query: 121 aaatatgagcaggacccagtaaaattttatgtcctaagacaggtgatgggtcacacttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatatgagcaggacccagtaaaattttatgtcctaagacaggtgatgggtcacacttgg 380

                                                                       
Query: 181 cttgaggttcaaaattttgctggtctgcagtatgcaggtcataccatctcattttgtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgaggttcaaaattttgctggtctgcagtatgcaggtcataccatctcattttgtcat 440

                                                                       
Query: 241 ggttaaaggcacaagtatgccatagaaaattatataccctgccaattactgataacctgg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ggttaaaggcacaagtatgccatagaaaattatataccctgccaattactgataacctag 500

                                                                       
Query: 301 caagtttgaaggtgtttagggtcccaagaaataataggacatttcattcaaagtaaaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagtttgaaggtgtttagggtcccaagaaataataggacatttcattcaaagtaaaagt 560

                                                                       
Query: 361 caggatgttttagcttgtacttctatctgctaacaaactggaccacatattagatggttc 420
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 caggatgttttagcttgtatttctctctgctaacaaactggaccacatattagatggttc 620

                      
Query: 421 tgtagatcttg 431
           |||||||||||
Sbjct: 621 tgtagatcttg 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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