BAC Information

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BAC

Clone NameMSMg01-434C24
Chromosome5 (Build37)
Map Location 87,620,714 - 87,791,610
singlet/doubletdoublet
Overlap geneUgt2b37, LOC665468, Ugt2a3, LOC665476
Upstream geneGnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848
Downstream geneLOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434C24.T7 (MSMg01no434_c24.b1)MSMg01-434C24.TJ (MSMg01no434_c24.g1)
ACCAG525794AG525795
length744740
length of high quality
(start - end)		567 (38 - 604)503 (67 - 569)
definitionCHROMAT_FILE: MSMg01no434_c24.b1 PHD_FILE: MSMg01no434_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:31 2005CHROMAT_FILE: MSMg01no434_c24.g1 PHD_FILE: MSMg01no434_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:31 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(87,620,714 - 87,621,276)(87,791,147 - 87,791,610)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAC
ATCAAATTGCTAGTTGGTAAGCTTGGAGGATTTCCCCAAAGTTGGATGTT
GCCCCTTATCTTGAAGAAACACTTTGCTGGGCTTCCGCCAGGTGATATAA
TGAATGCCTCTGAGCCTGGCCAGGTCTAAGTAACAGTACCCATTGTCACA
GCATATAGTTGTAACACTGCAGCCAGTCCAGAAGGAAAAGTAAGTGGGTA
AGGCCAGATCTCTGAGCATGCCAATAAATATTTCCATGTTGTACATGATC
CTGAGCTGATCTAAAATACCGAGTTCTCTGTACTTGTAATCAACCACATG
GACTTCAAATGTGGATACTGTTTTCAATGCGTTTACCAGTTCATTTTGGT
TCAGGATTTTTCTGGTGTTCTGTGCTGGGTGCAAGAATGGTACTTCAAAC
ATCCTTGGGTACCTCTTGAGTGATGTTCAGCCTATGCAGCACACGCTGGG
TGAAGGCTCTAAATAATCCAGTATTCTGACAGCTAGAGATTAGAGGTGTG
TTATAGAACAGCCCATTCCACATGCAGGGCAGCAACAAAAACACGGCTTC
TTTAANAGACCTCTTTTTGGAAATCAAGGTCTTCCAATGTATGTTATCAT
ATTAAGTAAATGCTTTCCAGGTATTGGAGAAGAGCCCCCCTATTGCTAAG
AGCTGATGGCGCCCATCCCAATTTAACCTCTTAACTGAAAAAAN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATATCCTTAAGCTGGGTGGCAAACACCTTTACCT
ACTGAGCCACCTCACTTCCTCATTAAACACTTTTGAACAGAAACTATTTT
AAGTAGGAGTACATTGTCGGAAACTAGTTGTATGTAATGCCTTTTCCTGG
ATATTATATATTTTGATAGTGATACGGATACCCAATGTGAATAAACTAAT
AGTGAAAAAGACAAGTGTATTATTTTTATATTATTATTATTTTTTAGACA
TCAAAATAATTTATAATAGTTAAATACTTCTTAAATATACATGAATCTTC
TGGAGCTAAAAGTAATAGGCACTCAACCAGTTTTTAATATCTATTTGGAA
CATTAAGCATGATAGAAGTAGAAAAAAATCTCTTCTGAAGACCTCTATGA
AAGGGAACTGTGCCAAGTTCCTAATTAGCCAGAAACTGTTTTGTCTCCTA
GGGATAACACTTAGGATAACTATGGCTTCATAGAATGAATTGGGTAGTGT
TCCATCTGTTTCTTTCTTGTGAATAGTTTGTAGAGTATTGGAATTAAGTC
TTTTTTTAAGGTCTAATAGAATCTGCCCTAACCCATCTGGTCCTGGGCNT
TTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNGGCNNGGAGAATTCAATG
ACTGTTTTTTTTTTTTAGGGGTTTCTCACGGTTAAAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_c24.b1 MSMg01no434_c24.b1 CHROMAT_FILE:
MSMg01no434_c24.b1 PHD_FILE: MSMg01no434_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:31 2005
         (567 letters)



>mm_chr5_87620510_87621476
          Length = 967

 Score = 1042 bits (539), Expect = 0.0
 Identities = 557/563 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacatcaaattgctagttggtaagcttggaggatttccccaaagttggatgttg 64
           |||||||| ||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatatcaaaagggtagttggtaagcttggaggatttccccaaagttggatgttg 264

                                                                       
Query: 65  ccccttatcttgaagaaacactttgctgggcttccgccaggtgatataatgaatgcctct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 ccccttatcttgaagaaacactttgctgggcttccgccaggtgatataatgaatgcctcc 324

                                                                       
Query: 125 gagcctggccaggtctaagtaacagtacccattgtcacagcatatagttgtaacactgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagcctggccaggtctaagtaacagtacccattgtcacagcatatagttgtaacactgca 384

                                                                       
Query: 185 gccagtccagaaggaaaagtaagtgggtaaggccagatctctgagcatgccaataaatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccagtccagaaggaaaagtaagtgggtaaggccagatctctgagcatgccaataaatat 444

                                                                       
Query: 245 ttccatgttgtacatgatcctgagctgatctaaaataccgagttctctgtacttgtaatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttccatgttgtacatgatcctgagctgatctaaaataccgagttctctgtacttgtaatc 504

                                                                       
Query: 305 aaccacatggacttcaaatgtggatactgttttcaatgcgtttaccagttcattttggtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaccacatggacttcaaatgtggatactgttttcaatgcgtttaccagttcattttggtt 564

                                                                       
Query: 365 caggatttttctggtgttctgtgctgggtgcaagaatggtacttcaaacatccttgggta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caggatttttctggtgttctgtgctgggtgcaagaatggtacttcaaacatccttgggta 624

                                                                       
Query: 425 cctcttgagtgatgttcagcctatgcagcacacgctgggtgaaggctctaaataatccag 484
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 cctcttgagtgatgttcagcctatgcagcacatgctgggtgaaggctctaaataatccag 684

                                                                       
Query: 485 tattctgacagctagagattagaggtgtgttatagaacagcccattccacatgcagggca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tattctgacagctagagattagaggtgtgttatagaacagcccattccacatgcagggca 744

                                  
Query: 545 gcaacaaaaacacggcttcttta 567
           |||||||||||||||||||||||
Sbjct: 745 gcaacaaaaacacggcttcttta 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no434_c24.g1 MSMg01no434_c24.g1 CHROMAT_FILE:
MSMg01no434_c24.g1 PHD_FILE: MSMg01no434_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:31 2005
         (503 letters)



>mm_chr5_87791147_87792049
          Length = 903

 Score =  890 bits (460), Expect = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatccttaagctgggtggcaaacacctttacctactgagccacctcacttcctcattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atatccttaagctgggtggcaaacacctttacctactgagccacctcacttcctcattaa 405

                                                                       
Query: 61  acacttttgaacagaaactattttaagtaggagtacattgtcggaaactagttgtatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 acacttttgaacagaaactattttaagtaggagtacattgtcggaaactagttgtatgta 345

                                                                       
Query: 121 atgccttttcctggatattatatattttgatagtgatacggatacccaatgtgaataaac 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 344 atgccttttcctggatattatatattttaatagtgatacggatacccaatgtgaataaac 285

                                                                       
Query: 181 taatagtgaaaaagacaagtgtattatttttatattattattattttttagacatcaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 taatagtgaaaaagacaagtgtattatttttatattattattattttttagacatcaaaa 225

                                                                       
Query: 241 taatttataatagttaaatacttcttaaatatacatgaatcttctggagctaaaagtaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 taatttataatagttaaatacttcttaaatatacatgaatcttctggagctaaaagtaat 165

                                                                       
Query: 301 aggcactcaaccagtttttaatatctatttggaacattaagcatgatagaagtagaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aggcactcaaccagtttttaatatctatttggaacattaagcatgatagaagtagaaaaa 105

                                                                       
Query: 361 aatctcttctgaagacctctatgaaagggaactgtgccaagttcctaattagccagaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 aatctcttctgaagacctctatgaaagggaactgtgccaagttcctaattagccagaaac 45

                                                       
Query: 421 tgttttgtctcctagggataacacttaggataactatggcttca 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  tgttttgtctcctagggataacacttaggataactatggcttca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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