Query= MSMg01no434_d18.b1 MSMg01no434_d18.b1 CHROMAT_FILE:
MSMg01no434_d18.b1 PHD_FILE: MSMg01no434_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:35 2005
(556 letters)
>mm_chr5_10015658_10016613
Length = 956
Score = 1062 bits (549), Expect = 0.0
Identities = 552/553 (99%), Gaps = 1/553 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgtcatttctccttgcttttagggaaagcatttgtataacagcatctcctact 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctgtcatttc-ccttgcttttagggaaagcatttgtataacagcatctcctact 263
Query: 64 gctgtttttactctagagaggacaaccagtactgacattcataacaatgctggtgctatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctgtttttactctagagaggacaaccagtactgacattcataacaatgctggtgctatt 323
Query: 124 gtgacaaacacattacttgtctttcttgtaaatagaattctctatgctcattatataaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgacaaacacattacttgtctttcttgtaaatagaattctctatgctcattatataaaa 383
Query: 184 tataatcttttgactttatgtaacattttattctagtaaatcaagtattctcatctatct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tataatcttttgactttatgtaacattttattctagtaaatcaagtattctcatctatct 443
Query: 244 gaattgtttctttaccattattcatgtatgtttatcatttttattttattcattgcttgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaattgtttctttaccattattcatgtatgtttatcatttttattttattcattgcttgt 503
Query: 304 ttaatggcttcaaggtttattattttctcaaaatgtcatttttattaattgagaaattat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaatggcttcaaggtttattattttctcaaaatgtcatttttattaattgagaaattat 563
Query: 364 aaaatatattctagctatctttatttgccttctcctctatctcctctgaaattaccttcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaatatattctagctatctttatttgccttctcctctatctcctctgaaattaccttcc 623
Query: 424 ctaaactatgggttacctgtctgtctgcctacctgtctgtgtgtaggtgggtgtctgtct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctaaactatgggttacctgtctgtctgcctacctgtctgtgtgtaggtgggtgtctgtct 683
Query: 484 atctgtttgctgcatccctcagtctgtatgttaacctatctagtccaatttttgttgcct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atctgtttgctgcatccctcagtctgtatgttaacctatctagtccaatttttgttgcct 743
Query: 544 aacttctcttcaa 556
|||||||||||||
Sbjct: 744 aacttctcttcaa 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_d18.g1 MSMg01no434_d18.g1 CHROMAT_FILE:
MSMg01no434_d18.g1 PHD_FILE: MSMg01no434_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:35 2005
(540 letters)
>mm_chr5_10171278_10172217
Length = 940
Score = 592 bits (306), Expect = e-173
Identities = 312/314 (99%)
Strand = Plus / Minus
Query: 227 tgtatcctatctgtgacacattctgtcaagtcgctgtttgatttgtcattgggtctgacc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 tgtatcctatctgtgacacattctgtcaagtcgctgtttgatttgtcattgggtctgacc 881
Query: 287 ctcaattagacatcactttaaaataggcctaactccttctacaaagtagccctatgtaca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ctcaattagacatcactttaaaataggcctaactccttctacaaagtagccctatgtaca 821
Query: 347 ttgtttggtattcagcatgtaaaaataaaagcctatctgtattccaagcagagcatccac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ttgtttggtattcagcatgtaaaaataaaagcctatctgtattccaagcagagcatccac 761
Query: 407 attgctggattaaaatttcttggcagtatatggtcgaattaaaaaaatgtatattctacc 466
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 760 attgctggattaaaatttcttggcagtatatggtcgaattaaaaaaacatatattctacc 701
Query: 467 atggtcattccattctcagtgttcaagtcaagccaagtgggcatttatttaccaaaatca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 atggtcattccattctcagtgttcaagtcaagccaagtgggcatttatttaccaaaatca 641
Query: 527 atatctgaaatact 540
||||||||||||||
Sbjct: 640 atatctgaaatact 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
