BAC Information

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BAC

Clone NameMSMg01-434J14
Chromosome5 (Build37)
Map Location 25,337,043 - 25,337,415
singlet/doubletsinglet
Overlap geneActr3b
Upstream geneRheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835
Downstream geneLOC100038949, EG272714
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434J14.T7 (MSMg01no434_j14.b1)MSMg01-434J14.TJ (MSMg01no434_j14.g1)
ACCAG526105AG526106
length772769
length of high quality
(start - end)
423 (39 - 461)376 (68 - 443)
definitionCHROMAT_FILE: MSMg01no434_j14.b1 PHD_FILE: MSMg01no434_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:03 2005CHROMAT_FILE: MSMg01no434_j14.g1 PHD_FILE: MSMg01no434_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTCTTTCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAG
TCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCT
TATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCC
CATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCCCCTGTTTTTTTTTCTTCAAGGCTTTTCCCCACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTA
GATTTGACCTTACCACAAGGAGATAAGTATGGATCGATTCGCATTCTTCT
ACACGATAACAACCAGTTGTGCCAGCACCAATTGCTGAAAATGCTGTCTT
TCTTTCCCTGTATGTGTTTAGCTCCCCTTGTCCAATATCAAGTGACCTTT
AGGTGTGTGTGTCTCATTTTTGGTCCCTCAACTTCTTTCCCCTTTGTCCT
ACCTTGTTCGTTTTTCATATCCTTTTCCTTGTTTTTTCTATTCCTTATCC
TTCTTCTTCGACTTTTCTCTTTTTCTTTTTTTTCTTTTTTCAATTCCCAC
CGAATTTCTTTTTCCACCTTTCACTATCACCCCTATTCCCTTCTTTTTCG
CCTTTTTTTTATCCCGTCATTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTAGAATGGGCCAAGCTTAGTTTGCTGGTCTCGA
AGTGAGGCTGGCACCTGACAGGGAGCCTGAGGGGGCAAGCAAAGCCTGGG
TGGAGACAAGGAGCTGATGTTTTATAGATATTATTTCAGACAATATGGCA
ACAGAATTAGGGAGAACATGGAAGTGATGTGTAACCATTGCAGAGAAAAC
AGACTTACCCATTCAAGTGTAGTCATGCTTAAGCTGAAAGACAGCAGGAC
ACATGCTTGATGTTTCTTTCTCACAAGAGTTACAGTGTAGGCAGAGATGA
ATTCAGAGGTGTCTGTAAGATGTGGGTTCTTGTGTATTTGTCAGAGGGCA
GAGACGTTGGCACTTATCAATGCTTTGGCCATGTCTTTTTGTGTACATAC
TGGAGAAGTACTGCTACATTTGCCCGGATATTGTCAGAGAATTTGCTAAG
TATGACGTACATCCCTCTTATGTGTACCTAACAGCTTCCCGTCCACTCAT
TGCTCTCCTCCATAATTATTTTCATTCATTTACGGTTGGCCTCTCACTTC
CTCCCCGCCTCCCTTCCTCCATCTTTTCTACTCTTCTTGTCATCATTCCT
TCATTCCTTCTCGCGTTCCTCCTTTTTTTTTTTTCTTTCCTACCTCCTTC
TCTTCTATTCCAACTTCCATCCTTCTCCTTATGCTTTCCTTCTCCTGCCT
ATATCTTCCTATCGTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_j14.g1 MSMg01no434_j14.g1 CHROMAT_FILE:
MSMg01no434_j14.g1 PHD_FILE: MSMg01no434_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:03 2005
         (376 letters)



>mm_chr5_25336843_25337618
          Length = 776

 Score =  667 bits (345), Expect = 0.0
 Identities = 366/373 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaatgggccaagcttagtttgctggtctcgaagtgaggctggcacctgacagggagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaatgggccaagcttagtttgctggtctcgaagtgaggctggcacctgacagggagcc 260

                                                                       
Query: 61  tgagggggcaagcaaagcctgggtggagacaaggagctgatgttttatagatattatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagggggcaagcaaagcctgggtggagacaaggagctgatgttttatagatattatttc 320

                                                                       
Query: 121 agacaatatggcaacagaattagggagaacatggaagtgatgtgtaaccattgcagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacaatatggcaacagaattagggagaacatggaagtgatgtgtaaccattgcagagaa 380

                                                                       
Query: 181 aacagacttacccattcaagtgtagtcatgcttaagctgaaagacagcaggacacatgct 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagacttacctattcaagtgtagtcatgcttaagctgaaagacagcaggacacatgct 440

                                                                       
Query: 241 tgatgtttctttctcacaagagttacagtgtaggcagagatgaattcagaggtgtctgta 300
           |||||  ||  || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatgggtcaatcacacaagagttacagtgtaggcagagatgaattcagaggtgtctgta 500

                                                                       
Query: 301 agatgtgggttcttgtgtatttgtcagagggcagagacgttggcacttatcaatgctttg 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 agatgtgggttcttgtgtatttgtcagagggcagagacgttggtacttatcaatgctttg 560

                        
Query: 361 gccatgtcttttt 373
           |||||||||||||
Sbjct: 561 gccatgtcttttt 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)