BAC Information

Click to search

BAC

Clone NameMSMg01-434M19
Chromosome5 (Build37)
Map Location 61,162,468 - 61,162,742
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
Downstream geneLOC666597, EG666610, LOC100041524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434M19.T7 (MSMg01no434_m19.b1)MSMg01-434M19.TJ (MSMg01no434_m19.g1)
ACCAG526255AG526256
length746777
length of high quality
(start - end)
277 (37 - 313)361 (69 - 429)
definitionCHROMAT_FILE: MSMg01no434_m19.b1 PHD_FILE: MSMg01no434_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:19 2005CHROMAT_FILE: MSMg01no434_m19.g1 PHD_FILE: MSMg01no434_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTATTG
GTATTCAAACACATTTGTTCTATGGATGACTCAAATGGAATATTAATCAG
GAGTTTTTCTGTTTCCTGTGCTGTCACTATTCATTCAAATGGACAAATTC
ATGGTTTTAAGATACAACAGTGAATGGGTAAAAACAACATGTATGCATAC
TTTGATGACATAGAGTTTGTGACTGTGTAATATCATGACCATATTAGTAA
ATCAAGATGCATTTGAGATTTTTTTCACATATCCAGAAACCCATTCTTTA
ATCAATTTTTGATTTTTTTATTTGAACAAAAATATGAATTTAACATATTA
TCACAGTCCTCACTATTGAAGAGCAAGTCATATGTATTTTAATTAATTTT
TGATATCATCACATAATTTAAAATTTATCTTCTTTTCTTTCCTTCCACTA
AAACCTCAATATGCTTCTTGTGGTCTTTTACAATCATTGTCCTTTATTTA
TAATATTGCCATTATTGGAANACATATATATACCTATATATATATATGTA
TATATGTATCTATGCCTAATTCGCACATATTAACTCCTCAATAATCTTGC
AATAATGTAACTTCTTACTTCTTTTTCTTCTCTCTATTTTTTTTACTCAT
CTCTTTCCATATATGTTTTATTTTTTCGCTTCACTTACTTTTCCTACCTT
AATTTTATTACTTTCTTTATTACCTCTCATAATTCCCTCTTTTTTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCGTTTAGCTTTGTGCCCCATTTTTTAAATG
GGGTTATTTGATTTTCTCGAGTCTAGGTTCTTGAGTTCTTTGTATAAATT
TGATATTAGTTCCCTATCAGATTTAGGATTGGTAAAAATCCTTTCCCAAT
CTGTTGATGGCCTTTTTCTCTTATTGCCAGTGTCTTTTGCCTTACAGAAG
CTTTGCAATTTTATGAGGTCCCATTTGTTGATTCTCCATCTTACAGCACA
ACATCACTGTTCTGTTTAGAAATTATTCCCCTGTGCTCATATCTTGACCT
CAAGCTGTACTACAGAGTAATTGTGCTAAAAACTGCATGGGGTTGGTATA
GCAACAGACAGGCAGATCGATGGAATAGAATTGAAGACCCAGAAATGAAC
GCACACACCTATGGTCACTGGATCTTTTGACAAGGAACTAAAACCCTTCC
TTGGAAAAAAAACAGTATTTTTTATAAATGGTGGTGATCTTACTGTGGGT
TAATCAGGGATAAAAATTGCATATTGTTCCCTTTTTTTTTTCCTCTGGAA
CCAACTTTTATTCTTTACTGGTTTCTTTACCTCGTCTCTAATATTTCCTG
AACCCTTCTTTCTTTATTTATAGTATTTTTTGTCTTTACACTTATCGGTT
ATTTCGTCACTATGTCTATCTACCTCACCCTTTGCCTTTCTTCTTTACAA
GTTTTTTTTATTTTCTTTTATTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_m19.b1 MSMg01no434_m19.b1 CHROMAT_FILE:
MSMg01no434_m19.b1 PHD_FILE: MSMg01no434_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:19 2005
         (277 letters)



>mm_chr5_61162265_61162942
          Length = 678

 Score =  501 bits (259), Expect = e-146
 Identities = 271/277 (97%), Gaps = 5/277 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctattggta---ttcaaacacatttgttctatggatgactcaaatggaatattaa 60
           ||||||||||||||   |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattctattggtaacct--aaacacatttgttctatggatgactcaaatggaatattaa 421

                                                                       
Query: 61  tcaggagtttttctgtttcctgtgctgtcactattcattcaaatggacaaattcatggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tcaggagtttttctgtttcctgtgctgtcactattcattcaaatggacaaattcatggtt 361

                                                                       
Query: 121 ttaagatacaacagtgaatgggtaaaaacaacatgtatgcatactttgatgacatagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttaagatacaacagtgaatgggtaaaaacaacatgtatgcatactttgatgacatagagt 301

                                                                       
Query: 181 ttgtgactgtgtaatatcatgaccatattagtaaatcaagatgcatttgagatttttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttgtgactgtgtaatatcatgaccatattagtaaatcaagatgcatttgagatttttttc 241

                                                
Query: 241 acatatccagaaacccattctttaatcaatttttgat 277
           ||| |||||||||||||||||||||||||||||||||
Sbjct: 240 acacatccagaaacccattctttaatcaatttttgat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 678
Length adjustment: 9
Effective length of query: 268
Effective length of database: 669
Effective search space:   179292
Effective search space used:   179292
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)