BAC Information

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BAC

Clone NameMSMg01-434O15
Chromosome5 (Build37)
Map Location 145,128,237 - 145,128,633
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
Downstream gene4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434O15.T7 (MSMg01no434_o15.b1)MSMg01-434O15.TJ (MSMg01no434_o15.g1)
ACCAG526341AG526342
length740731
length of high quality
(start - end)
278 (39 - 316)396 (71 - 466)
definitionCHROMAT_FILE: MSMg01no434_o15.b1 PHD_FILE: MSMg01no434_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:28 2005CHROMAT_FILE: MSMg01no434_o15.g1 PHD_FILE: MSMg01no434_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ATGGATTTCAGGATAACCTTGAACTTTGACCTTCCTGCCTCCAGCTCCCC
AGTGCTGGGATTATAGAATGTGCTTCTCTGCCCATCTTATGCAATCACGG
GGATCAAAGCCAGGGTAGGCAACTGATTGGTCACCAGGGCTATACCCAGA
GCCCCTCAAAAAAACAAAACATATTAATAAATTTATAAATAGTTTATATC
TTTATTTATCTATAAAACATAAATAAAGACAATTAATTCATAAATAGATA
ATACATAAATAAAATTATATTGGGCTGGTGAGATGGCTCAGCAGTTAAGA
GCACCGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACAT
GGTGGCTCACAACCATCTGTAATGAGATCTGACGTCCTCTTCTGGTGCAT
CTGAAGACAGGTACAGTGTACTTAGGTACTTATAAATAAATAAATAAACA
AATAAACAAATAAACCAATATTATATTAATTTAAGAATTTGCATGTGGGG
TTTGGGGGAGACATCACAGGAACAGCTTCCGTAGTTGGTAGTCTCTTATA
CAACTTTGAGTTCCCTATTTTTATGTAATTAGTGTTATTCTAGATTGGGT
ACCATTCGGGGCATTTTTGTAATTCCTCCTCAAGCGTGCCCTCTGTTTGT
CTCACTTCATTATGGACTTTAATTATCCGTCGTTGTATTA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACACCAAACACACACACACACACACACACA
CACACACCAAACACACATATACACATACATAAACACACCCCAAACACATG
CGCACGTAAAGTTTATAAAATTAACATTTCTTTATTTTTATTTATTTGTA
TGTCTATGCATGTGGACGTGTATACACTACAGTGTATGGAAGCCAGAGAA
CAACTCCTCAGGGATGGTCTTCTCCTTCTACTGTGTGGGTCCAGAGAATC
AAACTTAAGATGTCTGATTTGACTTCCTCTTTTTTTTTTTAAGATTTGTT
TTTTTTAATTTTATGTATGTGAGTACACTGTAGCTCTCTTCAGACATACC
AGAAGAGGGCATTGGATCTCATTATAGATGGTTGTGAGCCACCATATAGC
TGCTGGGACTTGACCTCTGGAAGGGCAGTCAATGCTCTTACTTACTGAGT
CATCTTTCCAGCCCCTTATTTGACTTTTTAAAAAAATATTAAAAACACGT
TTGCCGTTGCTGTTGTAACCCTTTTACTCCTCCCTCTCTCTCATTATACC
TCCTTGCATCTCTTGAACTTCATTCTATTCTAGTCCATCCCTCAATCTCC
CAAAACCATCCCTTATTTCTCGTCTTCTTGCAACCCCTACTTATTCACCA
AATACCCTGCTCCATCTCCACTCTCAAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_o15.g1 MSMg01no434_o15.g1 CHROMAT_FILE:
MSMg01no434_o15.g1 PHD_FILE: MSMg01no434_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:28 2005
         (396 letters)



>mm_chr5_145128043_145128838
          Length = 796

 Score =  625 bits (323), Expect = 0.0
 Identities = 377/405 (93%), Gaps = 21/405 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   caaacacacacacacacacacacacacacacaccaaacacacatatacacataca----- 59
           ||||||||||||||||||||||||||||||| ||||||||||  | |||||||||     
Sbjct: 591 caaacacacacacacacacacacacacacaccccaaacacac--acacacatacacacac 534

                                                                       
Query: 60  taaac--------acaccccaaacacatgcgcacgtaaagtttataaaattaacatttct 111
            ||||        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 caaacacacatatacaccccaaacacatgcgcacgtaaagtttataaaattaacatttct 474

                                                                       
Query: 112 ttatttttatttatttgtatgtctatgcatgtggacgtgtatacactacagtgtatggaa 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 473 ttatttttatttatttgtatgtctatgcatgtggacgtgtatacactacagtgaatggaa 414

                                                                       
Query: 172 gccagagaacaactcctcagggatggtcttctccttctactgtgtgggtccagagaatca 231
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcccgagaacaactcctcagggatggtcttctccttctactgtgtgggtccagagaatca 354

                                                                       
Query: 232 aacttaagatgtctgatttgacttcctctttttttttttaagatttgttttttttaattt 291
           |||||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||
Sbjct: 353 aacttaagatgtctgatttgacttcctc-ttttttttttaagatttg---tttttaattt 298

                                                                       
Query: 292 tatgtatgtgagtacactgtagctctcttcagacataccagaagagggcattggatctca 351
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 297 tatgtatgtgagtacactgtagctctattcagacataccagaagagggcattggatctca 238

                                                        
Query: 352 ttatagatggttgtgagccaccatatagctgctgggacttgacct 396
           ||||||||||||||||||||||  |||| ||||||||||||||||
Sbjct: 237 ttatagatggttgtgagccacc--atagttgctgggacttgacct 195


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)