BAC Information

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BAC

Clone NameMSMg01-435A15
Chromosome5 (Build37)
Map Location 130,836,069 - 130,836,468
singlet/doubletsinglet
Overlap genenone
Upstream geneSfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1
Downstream geneA330070K13Rik, Caln1, Wbscr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435A15.T7 (MSMg01no435_a15.b1)MSMg01-435A15.TJ (MSMg01no435_a15.g1)
ACCAG526436AG526437
length763830
length of high quality
(start - end)
410 (69 - 478)78 (73 - 150)
definitionCHROMAT_FILE: MSMg01no435_a15.b1 PHD_FILE: MSMg01no435_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:38 2005CHROMAT_FILE: MSMg01no435_a15.g1 PHD_FILE: MSMg01no435_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCTATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAGATTTCAGACAGTGCACGGCAGCTGGCCAATATATGTGCGT
TACAGAAGGGATGGCAGGGATGGCAGTGGAATTGTCTCCGTTGCTCACGG
TGGGAGCATGAGGCAGAAGGGGATTTCACACCATGGCTGACCAAGACGCA
GGGGGGAGGAGCCAGAATCAGGGAGCGGTAAAACCTACCAAGACTCACCT
TCAGTGCCCAGTTCTGCCAGTGCAGCCTCATCTCTGACAGGCTCTCCAGC
TTTCGAAGCAATAGCTCAGTCCATGTAAAACCCATGTACAAACCAATGTG
GCGGTAAACATCTGTAATCCTACTGCCGAGTGGGTGGAGACAGGTGGGTT
CTTAGGACTCACTGGCCAATAAGCTTAGCCTAATGAGCAAGCTTGTGGCC
AATGAGAGACTCTGTTTCAAAAAACAAACAAACAAACAACTCAAGGTGGC
ATGCTCTTGAAGAGTGTCACTCAAGGTTGACAGAACTCTGTCTACCCCGT
GTCCCTCAGCCCATGCACAGGCCCATGTTCAGGGATACGCTTACGCACAC
GCACACTGTACTACATTCTTTTTCCCTCGTGTTCGTCTTCGCTGTTCTCA
TTCCCCCCTTTCACCCCCCATAATTTTATTTTCCTATTCCCCTTTCTTTG
TTTCCGCGCTTTTTTGCTCCTTTCAGTCTGTTTCCCGTTTCTCTCATTTT
CCCCTTTTTCCCC
ATACTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCACTAAAGTTTTCTTCTCAAAGAATTG
GTGCATTTAATAAAATGATTGAAAATAACAGGAGTAAGTTTTCAATTAAT
AATGGTTGCTAANCAGTGAAGATGGAAATTCTANNAAAATAACTAAAAAA
AAGGACTTTTTAATAATGTAGNTGNNNNNNAGTCTAATATTANTGTTTTT
AAANGGGGGGGGATGGAGGGAGAGGGGAGGCGGCGGGGTGGCGGGGGGCG
GGGCGGGGCGCGGGGGGCGGAGGAGGGAGGGTGANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGNNNNNNNNNN
NNNGNNGTGCNCCCGAGGAGGGGGAGGGAGGGGAGGCCAAAATAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNTNNNNNNNNTT
NNNNTNNNNNNNNNNNNNNNNNNTNTTNNTNNNTNTNTTTTTNTTTTTTT
NTNNTTTTTTTTTTTTTTTTTTNTTTTTTTNTTTTTTTTTTTTTTNTNTT
TTTTTTTTCCTTTTTTTTTNNNNTNTTTTTTTTTTTTTTTTTTTTTTNTT
TTTTTTTTTTTTTTTTTTNTTTTTTNNTTTTTTTTTTTTTTTTTTTTCTT
TTTNNCCCTTNTTCTTCTCCTTTTTTTTTTCTTTTTTTCTCTTTCTCTTT
TTTTCTTTTTTTTTTCTCTCTTTTTTTTTTTTTTTTTTCCCCCCTTTTTT
TTTTTCTCCTCCTTTCCTTCTCTTGCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_a15.b1 MSMg01no435_a15.b1 CHROMAT_FILE:
MSMg01no435_a15.b1 PHD_FILE: MSMg01no435_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:38 2005
         (410 letters)



>mm_chr5_130835860_130836668
          Length = 809

 Score =  708 bits (366), Expect = 0.0
 Identities = 395/410 (96%), Gaps = 10/410 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgcacggcagctggccaatatatgtgcgttacagaagggatggcagggatggcagtg 60
           |||||||||||||||||||| ||||||||||||||||||||||||||||         ||
Sbjct: 210 cagtgcacggcagctggccagtatatgtgcgttacagaagggatggcag---------tg 260

                                                                       
Query: 61  gaattgtctccgttgctcacggtgggagcatgaggcagaaggggatttcacaccatggct 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gaattgtctccgttgctcacggtgggagcatgaggcagaaggg-atttcacaccatggct 319

                                                                       
Query: 121 gaccaagacgcaggggggaggagccagaatcagggagcggtaaaacctaccaagactcac 180
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 320 gaccaagacgcagggggaaggagccagaatcagggagcggtaaaacctaccaaggctcac 379

                                                                       
Query: 181 cttcagtgcccagttctgccagtgcagcctcatctctgacaggctctccagctttcgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttcagtgcccagttctgccagtgcagcctcatctctgacaggctctccagctttcgaag 439

                                                                       
Query: 241 caatagctcagtccatgtaaaacccatgtacaaaccaatgtggcggtaaacatctgtaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caatagctcagtccatgtaaaacccatgtacaaaccaatgtggcggtaaacatctgtaat 499

                                                                       
Query: 301 cctactgccgagtgggtggagacaggtgggttcttaggactcactggccaataagcttag 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctactgccgagtgggaggagacaggtgggttcttaggactcactggccaataagcttag 559

                                                             
Query: 361 cctaatgagcaagcttgtggccaatgagagactctgtttcaaaaaacaaa 410
           |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 560 cctaatgagcaagcttgtggccaatgagagactctgtttcgaaaaacaaa 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 809
Length adjustment: 9
Effective length of query: 401
Effective length of database: 800
Effective search space:   320800
Effective search space used:   320800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)