BAC Information

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BAC

Clone NameMSMg01-435F02
Chromosome5 (Build37)
Map Location 126,312,772 - 126,313,246
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b
Downstream geneEG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435F02.T7 (MSMg01no435_f02.b1)MSMg01-435F02.TJ (MSMg01no435_f02.g1)
ACCAG526650AG526651
length763768
length of high quality
(start - end)
497 (48 - 544)364 (76 - 439)
definitionCHROMAT_FILE: MSMg01no435_f02.b1 PHD_FILE: MSMg01no435_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:00 2005CHROMAT_FILE: MSMg01no435_f02.g1 PHD_FILE: MSMg01no435_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGAAAGCAATTTAGTAAATTTGATTAATGTCTCCTTACATCA
CATAGATATTTTCTACAGTGCATATAAGCACATATATTTTAGAATATACT
GAAACTTAAAAATGTAAATTAAAAAAAAAAACAAAAACCTCTACCAACTT
CAAATTAAAAAACACATTTATTTTAGAATTCTCTAGGATACTCGTAATTT
CCTGTATTCCCTACTCATGATGTCCATATGTTAGCATCTTACAAATTTGT
ATGATAATAATGAGGAGAAAATAAAATTTGTAAGGAAAAAAAAAAGACAG
TTTTGTCTTAGACTACTTATTAACAAATGCCTGGGCCACAAACTGTGGCT
TATTCCCAGAATAACGTATTTAACACATTCAAAATATTTTATGTTTTGTA
CATTTTTAGTTACCCCTTTATCTATTTACTTAGCATCTTCCTAAATATCT
CCCTTAGCATATGTGCCAGCATCTGTCCCTGAATCTGTTTATTCTCCTAA
TATTTCATAGAATACTCTTCTTTTTGAAAAGCCTCACCTCATATTTTCTT
CCTCACCTCATTTGTCATACACATTATTTAATTGACAGATGATGTTTATA
AGAAAGTCTCAAAATTTGTGGTATTAAAAAAAAACTAAATATTCCATTTA
AAAAAATTAAAATAATGTTTTTTTGCCCGCCCCTATTTTTTTTCCTAATC
TCCCAATTCCCCN
CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTCGCACCTGCGTACAAGGCTT
GTTTACTAGTTAGGCACAGTGGAGGCCCGCACCATCTTATAATGTTGATT
GCTCACGGCACACATGGCTCTTCTCAGAGATTACTGGCAGCACGCACGTA
ATTGCTTGCAGCACGTACCGGCTCTCCACAATTCACCACGATATCTGCAG
TCCCTTCTATGAATAGTCTGTTGTAACCTGGAGAATTCTGGTCATCCACT
CTGATACCACTACTGTTGTAGCAACTTGAACTTCTCTTAAACCAGTCAGT
CCCTTTCTATAGAGATGATTCATCCCTGAAGCATCTACATGGGAGAGAGA
ATGGAGAGCATAGAAATCAGAGAGATGCAGAAGTAATCTAGACTTCAAGC
TGAGAAAAGAAAAAGTGGTCCTGCGGAAAATACAGTGATTTCTGTGTAGA
GAATATGGAGCATCCCTATAAAGGAACCTCTGAACTGCCTCTGTTATTCT
TGACGCATAATTGTCCTTTGTTACACACTCTCCTCGTATTATCTTCTCCT
CCCATTCTCTCTCCACGCTCGCATTTTTTATTGACCTTTTCTCTTTTATC
TATTATTCTCCCGTGTATCTACTCCCGCCTTTAATATCACGTCCATTCTC
TCCGCTCCTCTTTTTTTTCCTTTTATCCTTTTTTAATATCCCTCTTTTGT
TTGTCCCTTTACCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_f02.b1 MSMg01no435_f02.b1 CHROMAT_FILE:
MSMg01no435_f02.b1 PHD_FILE: MSMg01no435_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:00 2005
         (497 letters)



>mm_chr5_126312528_126313423
          Length = 896

 Score =  223 bits (115), Expect = 3e-62
 Identities = 378/491 (76%), Gaps = 58/491 (11%)
 Strand = Plus / Plus

                                                                       
Query: 41  tctccttacatcacata-gatattttctacagt-gcat---ataagcacatatattttag 95
           ||||||||||||||| | || ||||||||| || | ||   |||| ||||||||||||||
Sbjct: 245 tctccttacatcaca-aggacattttctactgtag-atataataaacacatatattttag 302

                                                                       
Query: 96  aatatactgaaactt-aaaaatgtaaattaaaaaaaaaaacaaaaacctctaccaacttc 154
           ||||||| ||||||| ||||||| ||||  ||||       ||| ||||||||| |||| 
Sbjct: 303 aatatacagaaacttgaaaaatggaaatggaaaa-------aaatacctctaccgacttt 355

                                                                       
Query: 155 aaattaaaaaacacatttattttagaattctctaggatactcgtaatttcctgtattccc 214
            |||||||||||||||||||||||||||||||||||||| | | ||||||| | || |||
Sbjct: 356 gaattaaaaaacacatttattttagaattctctaggatagttgcaatttcccgcataccc 415

                                                                       
Query: 215 tactcatgatgtccatatgttagcatcttaca-aatttgtatgataataatgaggagaaa 273
           ||| |||||| ||||||| ||||||||||||| |||  |||||| |||||| ||||||||
Sbjct: 416 tacacatgatttccatatattagcatcttacataatc-gtatgaaaataattaggagaaa 474

                                                                       
Query: 274 ataaaatttgtaaggaaaaaaaaaagacagtttt---------gt--ct--t-------- 312
            |||  |||||||    ||||||||  | |||||         ||  ||  |        
Sbjct: 475 ttaacctttgtaa----aaaaaaaatcc-gtttttccttccctgttcctgctccctgaat 529

                                                                       
Query: 313 ----------agactacttattaacaaatgcctgggccacaaactgtggcttattcccag 362
                     |||||| |||||||||||||||| |||||||| || |||||  ||||  |
Sbjct: 530 gacgactctgagactatttattaacaaatgcctaggccacaagctttggctccttcctgg 589

                                                                       
Query: 363 aataacgtatttaacacattcaaaatattttatgttttgtacatttttagttacc-c-ct 420
           | |||| |||||||| |||||||| |||| || || || |||||  |||| |||| | ||
Sbjct: 590 actaacttatttaacccattcaaactattctaagtcttctacatggttagatacctctct 649

                                                                       
Query: 421 tt-atc-tatttacttagcatcttcctaaatatctcccttagcatatgtgccagcatctg 478
           || ||| | ||  |||||||||||||| || |||||||||||||| ||  ||||||||| 
Sbjct: 650 ttcatcctcttc-cttagcatcttcctcaacatctcccttagcatctgccccagcatctt 708

                      
Query: 479 tccctgaatct 489
           |||||||||||
Sbjct: 709 tccctgaatct 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space:   431482
Effective search space used:   431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)