BAC Information

Click to search

BAC

Clone NameMSMg01-435K22
Chromosome5 (Build37)
Map Location 80,334,303 - 80,334,689
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435K22.T7 (MSMg01no435_k22.b1)MSMg01-435K22.TJ (MSMg01no435_k22.g1)
ACCAG526930AG526931
length805832
length of high quality
(start - end)
388 (43 - 430)213 (71 - 283)
definitionCHROMAT_FILE: MSMg01no435_k22.b1 PHD_FILE: MSMg01no435_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:31 2005CHROMAT_FILE: MSMg01no435_k22.g1 PHD_FILE: MSMg01no435_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATTCCTCACACGGGGGAAGCTGGCAGCGCAGAGGCTTTCTGTTCACA
AGTCTCACATGCCACTTATGCTTCATTTCCTGAGCTATCAGCTTCAAGGC
TTTCACACTAAAGCATATGGCTTAGATCACTGTGTTTCCCTGCACACTCC
CATTAGGTCTGCCCACATCTTGGCTGGCTAGAATAGCTGCTGTTTTGGCC
AATGAATCCTGTTTCCCCGACTGAGTAGAAATAACTGAAGTCATAATTGA
CATATTTTAGCCATTGCTAGAAAAAGCTGCTAGGTCGAAAGTCCTCTTTT
CGGTGGCTCTAAAACGCATTTCTGAAACCCCAGGAAATGGGGCATTTATG
CTAGTGTTCAATTGGCTGCTTGTATTTCAGGCAAGAAGTACACTCATCTT
TAGAGGACTTGGTCCTTTATTTGGTACAGACAATGAAGTCTTAAGAAAAT
TTCCTCTTTCCCTCTCTAGTCCAAAAAAATCCCAGAAACAGTTCATCTTT
TCTTCGCTACGTGGATTTCTACACTGGGACTATGAACTCTTCTCCATCAA
ACCTTCTACTTCACTTTGTTTTTTTTTTTTCCCCTTCCTTTTCTTACTTT
TCTTTTTCCACTTCCTTTTTTCCCTTTCCCCATTCTTCCTTTTTTCTCCT
TCTCTTTCTTCCTTCCTCCTCCGTCCTTTTTCTTTTCCCCCACTTTTCCC
TCTTCTCCCCCCTGCTCTTTCCCTTTTTTTCCCCTTTCTTCCTTTTTATT
CTTCN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATG
GGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATG
TGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTT
TCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAG
GATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTACTGATAATTTTA
TTGACGATTTTCGCATCGTTTTTTTTTACACAATCTGGTTTGATTGTCCC
TATCTTCTGCTTATTTTTTTTTTTTTTTTCTCCTCCTTATTTTTTTTTTT
TACTCTTATTTGTTCCCCCCCCCTTCATTTTTTATCTACCTCCTTCTTTT
TTATTTTTTCCATTTTTTTATACTTCATCTATTCTCTCCTCTTTTCATAC
TTCTTTATATTTTTTCCTTTCCTTTCCTCCTCCTTTTTTTTTTTTTCTCT
CCCTTTTCCTCCTCTTCCTTATCTCTCTTCTACTATAATTTTTTTTTTCT
TTTTTCTTATTTTACCCAAACTTTATTCACTACTCCCCCTCTTTTTATTC
CCACCCTCTTTCTTTTTTCATCCTTCTTCCTTTTTTTTTTTCCCTCCTCC
CCCTTTTTCTCTTCATCTTTTTTTTCTCGCACTATCTCCTATCCACCTTC
CTCTATACATCCTCGCCTCCATTATCCTTCCATCCAATAATTTTTTTCCA
CTTTTATTATACTTCTCTTTCACCATATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_k22.b1 MSMg01no435_k22.b1 CHROMAT_FILE:
MSMg01no435_k22.b1 PHD_FILE: MSMg01no435_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:31 2005
         (388 letters)



>mm_chr5_80334099_80334889
          Length = 791

 Score =  687 bits (355), Expect = 0.0
 Identities = 378/387 (97%), Gaps = 3/387 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattcctcacacgggggaagctggcagcgcagaggctttctgttcacaagtctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaattccattcctcacacgggggaagctggcagcgcagaggctttctgttcacaagtctc 532

                                                                       
Query: 65  acatgccacttatgcttcatttcctgagctatcagcttcaaggctttcacactaaagcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 531 acatgccacttatgcttcatttcctgagctatcagcttcaaggctttcacattaaagcat 472

                                                                       
Query: 125 atggcttagatcactgtgtttccctgcacactcccattaggtctgcccacatcttggctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 atggcttagatcactgtgtttccctgcacactcccattaggtctgcccacatcttggctg 412

                                                                       
Query: 185 gctagaatagctgctgttttggccaatgaatcctgtttccccgactgagtagaaataact 244
           |||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct: 411 gctagaatagctgctgttttggccaatgaatcctctatccctgactgagtagaaataact 352

                                                                       
Query: 245 gaagtcataattgacatattttagccattgctagaaaaagctgctaggtcgaaag---tc 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 351 gaagtcataattgacatattttagccattgctagaaaaagctgctaggtcgaaagtcctc 292

                                                                       
Query: 302 ctcttttcggtggctctaaaacgcatttctgaaaccccaggaaatggggcatttatgcta 361
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctcttttcagtggctctaaaacgcatttctgaaaccccaggaaatggggcatttatgcta 232

                                      
Query: 362 gtgttcaattggctgcttgtatttcag 388
           ||||||||||||||| |||||||||||
Sbjct: 231 gtgttcaattggctgtttgtatttcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 791
Length adjustment: 9
Effective length of query: 379
Effective length of database: 782
Effective search space:   296378
Effective search space used:   296378
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)