Query= MSMg01no435_m01.b1 MSMg01no435_m01.b1 CHROMAT_FILE:
MSMg01no435_m01.b1 PHD_FILE: MSMg01no435_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:37 2005
(516 letters)
>mm_chr5_28891503_28892414
Length = 912
Score = 905 bits (468), Expect = 0.0
Identities = 488/496 (98%), Gaps = 4/496 (0%)
Strand = Plus / Minus
Query: 21 ggttgatttgggctcacagttaaaagcaatagaggcatctggtatctataccatcatggc 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ggttgatttgggctcacagttaaaagcaatagaggcatctggtatctataccatcatggc 842
Query: 81 tggaaaggtacaaaggcgagagcatgaggcacccagtcacaatgaatccagtcgggaaca 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tggaaaggtacaaaggcgagagcatgaggcacccagtcacaatgaatccagtcgggaaca 782
Query: 141 tagtgaaacaggaagtgagacaaggaagatgcccaacatcagtggctcaggtcctctagc 200
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 781 tagtgaaacaggaagtgagacaaggaagatgcccaacctcagtggctcaggtcctctagc 722
Query: 201 taggtcccatattaaggccagcacccatcaggaaacctaacattgtaacagaaacctacc 260
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 721 taggtcccatattaaggcc-gcacccatcgggaaacctaacattgtaacagaaacctacc 663
Query: 261 atatccaaaccacatcatgaaaagaggtggtggcctttctagggagaacacagtactcag 320
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 662 atatccaaaccacatcatgaaaaga---ggtggcctttctagggagaacacagtactcag 606
Query: 321 ctcccatgtaagcagagacaacctcctaagcataagttttctcactgtcaagtgaacatg 380
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 605 ctcccatgtaagcagagacaacctcctaagcataagttttctcactgccaagtgaacatg 546
Query: 381 tacacggcagatgacagggatggtggaatgactgctggtacccagagccctagccaccat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tacacggcagatgacagggatggtggaatgactgctggtacccagagccctagccaccat 486
Query: 441 cacaaaagtcaagctgtgccaccttggggtttccacacttggtaaacagcagtatgttct 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cacaaaagtcaagctgtgccaccttggggtttccacacttggtaaacagcagtatgttct 426
Query: 501 gcaccgcacaagactg 516
||||| ||||||||||
Sbjct: 425 gcaccacacaagactg 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 912
Length adjustment: 10
Effective length of query: 506
Effective length of database: 902
Effective search space: 456412
Effective search space used: 456412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_m01.g1 MSMg01no435_m01.g1 CHROMAT_FILE:
MSMg01no435_m01.g1 PHD_FILE: MSMg01no435_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:37 2005
(176 letters)
>mm_chr5_28695374_28695949
Length = 576
Score = 310 bits (160), Expect = 4e-89
Identities = 169/172 (98%)
Strand = Plus / Plus
Query: 5 tttagagcaatttttcgacactcttgctttgtggctgttatttgtggtggtaccatctga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tttagagcaatttttcgacactcttgctttgtggctgttatttgtggtggtaccatctga 264
Query: 65 aactggttctttttttgcctcgttcccatacttaggaaagtttgtttttttgtttttttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactggttctttttttgcctcgttcccatacttaggaaagtttgtttttttgtttttttg 324
Query: 125 tttttgtttttctttcttaaattgctgttcaagctgtatacctttagctttt 176
||||||||||||||||||| ||||||||||||| ||||||| ||||||||||
Sbjct: 325 tttttgtttttctttcttagattgctgttcaagttgtatacatttagctttt 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space: 95424
Effective search space used: 95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
