Query= MSMg01no435_m20.b1 MSMg01no435_m20.b1 CHROMAT_FILE:
MSMg01no435_m20.b1 PHD_FILE: MSMg01no435_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:41 2005
(410 letters)
>mm_chr5_79183190_79184000
Length = 811
Score = 714 bits (369), Expect = 0.0
Identities = 399/409 (97%), Gaps = 3/409 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagttcttactgttactccattgcactggtccccagggataagctaggatccat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ggaattcagttcttactgttactccattgcactggtccccagggataagctaggatccat 552
Query: 64 ccctattatgcagaaaggaagtgacaaaagaggtcctcaattactgtcttcattgatatc 123
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 551 ccctattatgcagaaaggaagtgacaaaagaggtcctcaattactgtctacattgatatc 492
Query: 124 cctgcctctgtggagaactgagataatatcccactttagaggaacaagtttgtaggttac 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cctgcctcagtggagaactgagataatatcccactttagaggaacaagtttgtaggttac 432
Query: 184 ttctgagcttttattggggatcagtgtatgacacagggtataagtttgaaccaggtagtt 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttccgagcttttattggggatcagtgtatgacacagggtataagtttgaaccaggtagtt 372
Query: 244 aaggaaagctctctgaattaatatgtctagtttctccaggg-caagcggatgaataatca 302
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 371 aaggaaagctctctgaattaatatgtctagtttctcc-gggccaagcggatgaataatca 313
Query: 303 ttcccactaaaacgttcatactacattctaagtgattgtctgctaatataaatagattt- 361
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 312 ttcccactaaaacgttcatactaaattctaagtgattgtctgctaatataaatagattta 253
Query: 362 aaaattacaacatcaatggaaaataaaattacatttaaagaaatatatt 410
|||||||||| ||||||| ||||||||||||||||||| ||||||||||
Sbjct: 252 aaaattacaagatcaatgaaaaataaaattacatttaaggaaatatatt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 811
Length adjustment: 9
Effective length of query: 401
Effective length of database: 802
Effective search space: 321602
Effective search space used: 321602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_m20.g1 MSMg01no435_m20.g1 CHROMAT_FILE:
MSMg01no435_m20.g1 PHD_FILE: MSMg01no435_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:41 2005
(161 letters)
>mm_chr5_79029430_79029990
Length = 561
Score = 271 bits (140), Expect = 2e-77
Identities = 161/180 (89%), Gaps = 19/180 (10%)
Strand = Plus / Plus
Query: 1 attccactttttctgaatatgtaaggtttttttttttttttt------------------ 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 attccactttttctgaatatgtaaggttttttttttttttttgttttttttttttttttt 241
Query: 43 -tttttgctgagtgattttcattgtgtcatttcttgagtggttctaacaagaaggcatag 101
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttttttgctgagtgattttcattgtgtcatttcttgagtggttctaacaagaaggcatag 301
Query: 102 gataatgtggaatattgccttagaacaatttatttatctttagggagaatgaacatgtgt 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gataatgtggaatattgccttagaacaatttatttatctttagggagaatgaacatgtgt 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space: 84609
Effective search space used: 84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
