BAC Information

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BAC

Clone NameMSMg01-435N15
Chromosome5 (Build37)
Map Location 53,198,216 - 53,377,261
singlet/doubletdoublet
Overlap geneZcchc4, Anapc4
Upstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b
Downstream geneSlc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435N15.T7 (MSMg01no435_n15.b1)MSMg01-435N15.TJ (MSMg01no435_n15.g1)
ACCAG527059AG527060
length802788
length of high quality
(start - end)
366 (43 - 408)385 (72 - 456)
definitionCHROMAT_FILE: MSMg01no435_n15.b1 PHD_FILE: MSMg01no435_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:45 2005CHROMAT_FILE: MSMg01no435_n15.g1 PHD_FILE: MSMg01no435_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,198,216 - 53,198,580)(53,376,877 - 53,377,261)
sequence
AATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTACAGTACCAGGAAGGCAAGGGGGTGATTATGGTGACAGACCCTCCC
TTTGGCGGCTTGGTGGAACCTCTGGCTATTACATTCAAGAAGTTAATTGC
TATGTGGAAAGAAGGTCAAAGCCAAGGTGCCTTTTTTTTTTAAATTTTTT
TTGTTAATTACTGCAAAATGAGCTCGTGTTTATGTGTCTGCTTCTGCTTC
CTGTCAACACGAGCCAAGCCTAGCAGTTACGGAGTGTGCAGCTCTGGGCT
CTCTGTAAAAGCACATTTGATTGGATGATGGCAAACTTCATGACCATGGG
ACACTTCCTCTTACCCTAGTCATGTTTTTTAAATGGCTTCTCAGGACCAT
GGTTGTAAGACTATGGAGCACTGTGAAGCACAACAGTGAGCTGTCGTCAT
TTGTCCAAAATATACTCAACAAGAGGCTCCTGTGCGCGCATGGATTTGCT
TGCTAATAAAACATCACTGACTTTCGTTCTCTGCCCTTTTAGCTTCTCCC
ATTTTTGTTACCTCCCCTTCTCTTTACTTACTTTCCGCCTTTCCTTCCTT
TTCTTTTTCTTTCCATATTCTTTTCTGTTACTTTCTTCCCCTTTTTTTTT
TTCCCTCTCCTTTTCTTTACTTCTCCTTTCTTTTTTTCCTTCCCTTTTTC
TCCTCTTTTCTTTGCTCTTTTTTCCCGTTCTTTCCATTTACCCCCCTATC
TTTTTCTTTCCATTTTGTTATTCCCCTTATATCTCTTCCCATTTTTCTTT
CA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTGTCCCATTGTTATTTATTTATTCAT
TTATTTTAAGACAGGATACTCCTGTGCAAATCAAGTTGGCATCAAGTTCT
CAAGGCTCCTGCCACAGCCCTAGGTACACTAAGTTTTTACAGTTGAGAGA
TGGAATTGATGAACAATGACTAACCTTCCCACTGCCTGTAATTCCTAGCA
GTGACTAGCAGAGTCACTTTGTGACTCTCTATCTCAGCCTGAGACCCTTT
CTGGAACAAGGTGATTATTATGTAAATGGCTTTACACTCCAGCCCCTCTC
AGGTGTTTTTAGTAGAGCAGAAATGTGATTAAGCCGGGCGTGGTGACACA
CACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGATTT
CGAGGCCAGCCTGCTCTACTAAGTGTGTTCCAGGACAGCCCAGGCTATAT
TGACAAACTCTGCCTCGAATAATTTTCCTTTAATAATACATAACACTACC
ACCTACTTTCTTTTGCTTAATCCCCTGTCTGCCCTTTTGCTTAATAAGTA
CTGAATCCCGGCCCCATCCACTTGTCTCTTTCGACATCCTTCTTTCGTCT
TTTTTTCATCTCCTAGTTTCTCTTTTTACTTTTTCCTTAACTATTTTCTT
CCCCTTGTCCCCCTATTCCGCACCTTGCCATTCTAAATTTATCTTTTCCT
TTCCCTCCTTTCTCTTACTTTTCCCACCCCTCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_n15.b1 MSMg01no435_n15.b1 CHROMAT_FILE:
MSMg01no435_n15.b1 PHD_FILE: MSMg01no435_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:45 2005
         (366 letters)



>mm_chr5_53198015_53198780
          Length = 766

 Score =  663 bits (343), Expect = 0.0
 Identities = 359/365 (98%), Gaps = 2/365 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttacagtaccaggaaggcaagggggtgattatggtgacagaccctccctttgg 63
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcttacaggaagaggaaggcaagggggtgattatggtgacagaccctccctttgg 261

                                                                       
Query: 64  cggcttggtggaacctctggctattacattcaagaagttaattgctatgtggaaagaagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cggcttggtggaacctctggctattacattcaagaagttaattgctatgtggaaagaagg 321

                                                                       
Query: 124 tcaaagccaaggtgcc--ttttttttttaaattttttttgttaattactgcaaaatgagc 181
           ||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 322 tcaaagccaaggtgcctttttttttttttaattttttttgttaattactgcaaaatgagc 381

                                                                       
Query: 182 tcgtgtttatgtgtctgcttctgcttcctgtcaacacgagccaagcctagcagttacgga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcgtgtttatgtgtctgcttctgcttcctgtcaacacgagccaagcctagcagttacgga 441

                                                                       
Query: 242 gtgtgcagctctgggctctctgtaaaagcacatttgattggatgatggcaaacttcatga 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtgtgcagctctgggctctctgtaaaagcacatttgattggatgatggcaaacttcatga 501

                                                                       
Query: 302 ccatgggacacttcctcttaccctagtcatgttttttaaatggcttctcaggaccatggt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccatgggacacttcctcttaccctagtcatgttttttaaatggcttctcaggaccatggt 561

                
Query: 362 tgtaa 366
           |||||
Sbjct: 562 tgtaa 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no435_n15.g1 MSMg01no435_n15.g1 CHROMAT_FILE:
MSMg01no435_n15.g1 PHD_FILE: MSMg01no435_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:45 2005
         (385 letters)



>mm_chr5_53376752_53377536
          Length = 785

 Score =  683 bits (353), Expect = 0.0
 Identities = 377/385 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttgtcccattgttatttatttattcatttattttaagacaggatactcctgtgcaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgttgtcccattgttatttatttattcatttattttaagacaggatactcctgtgcaaat 451

                                                                       
Query: 61  caagttggcatcaagttctcaaggctcctgccacagccctaggtacactaagtttttaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 450 caagttggcatcaagttctcaaggctcctgccacagccctaggtacattaagtttttaca 391

                                                                       
Query: 121 gttgagagatggaattgatgaacaatgactaaccttcccactgcctgtaattcctagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gttgagagatggaattgatgaacaatgactaaccttcccactgcctgtaattcctagcag 331

                                                                       
Query: 181 tgactagcagagtcactttgtgactctctatctcagcctgagaccctttctggaacaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgactagcagagtcactttgtgactctctatctcagcctgagaccctttctggaacaagg 271

                                                                       
Query: 241 tgattattatgtaaatggctttacactccagcccctctcaggtgtttttagtagagcaga 300
           |||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgagcagcatgtaaatggctttacactccagcccctctcaggtgtttttagtagagcaga 211

                                                                       
Query: 301 aatgtgattaagccgggcgtggtgacacacacctttaatcccagcactcgggaggcagag 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aatgtgattaagcggggcgtggtgacacacacctttaatcccagcactcgggaggcagag 151

                                    
Query: 361 gcaggcggatttctgatttcgaggc 385
           |||||| ||||| ||||||||||||
Sbjct: 150 gcaggcagatttttgatttcgaggc 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)