BAC Information

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BAC

Clone NameMSMg01-435P02
Chromosome5 (Build37)
Map Location 132,819,047 - 132,819,478
singlet/doubletsinglet
Overlap geneAuts2
Upstream gene4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435P02.T7 (MSMg01no435_p02.b1)MSMg01-435P02.TJ (MSMg01no435_p02.g1)
ACCAG527128AG527129
length781869
length of high quality
(start - end)
438 (46 - 483)227 (78 - 304)
definitionCHROMAT_FILE: MSMg01no435_p02.b1 PHD_FILE: MSMg01no435_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:52 2005CHROMAT_FILE: MSMg01no435_p02.g1 PHD_FILE: MSMg01no435_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCTTTTGTGTTTTGTCTCATGCAGCCCAGGCTGGCCTCAAACACGCT
GTATAGTGAAGATATGTTCTTCCTGCCTACCTATGCCAAGTGCTAGATTT
ACAGTATGCACCACCACATCCAGGTTATTATGTACTGGGAATGAAACACA
GGCCTTCACAAATGCTAGGCAAGCACTTTGCCTGCTGACCCACATCCCTA
GCTTTAGCTTTGGTTTTTCGTATAGTAAATATATTAATTTGTTGGATCTT
TATATGAAATTTGTCCCTGGAAAAAGAGGACTTGGCTCTTGGAGGGCCAT
TCTTCACATTGAGAGCCTGTGCTCATGCAGTATTTGCATTGTGGGGCTCA
TGTTGATTTTAAACCTTATACAGAGTATTGTTGTTTAGGGCCACCATGGA
AATAAAATGAATCGTACCCTTTCTGAGATCATATAACAGGTACTTAGTTC
GTTGCTGTTCGTAGCCCCGCTTTCTCCTTTGTAAGAACTATTTCCTTGAT
TTTGTACCTCTCTATCCCATTTTTCCCCCCCCCCTATTAACCTCACGGTC
TTTTCGAGCTACCACCCCCTTTCATCCGTTTTTTTCCCCCCCCGTCTCCC
CCCCCGCTTTTCTTCACCCTCTTTTCTTTTACCCCCCTTTTTATCTCTTC
TTCTTCCCCTCTTCCCCCCCCGTTAATATTTTTTTTTTCCCCCCCATTTT
CTATTTCCTTTATACACCACCGCTTTTCCCG
CCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATTGTAGCTTTCTGGGGTCA
GGGTGGGTGGTCTGGGCCCAGTTTTGTTCTTGTTTGTTTGTTTGTTTGTT
TGTTTGCAAATAAAAGACGTGACTAGTTCAAAGAGGCAAAGGCTCATTTT
CTACTCTGTAAATTGAGGAGATCTCTGGCTCTCTGTCTCTCTGCCTCTCT
GTCTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTGCGTGTGTGCGTTGTTTTTGTTTTTTTCCCAATACCCCGCATCCCC
TCATATACACGCGTCGTTTATTATTTTGCTTTTCCATCGCCTGGTTTCTC
GCCTCGCCCTGGTGTTTCAACTTCGCCCTCTATACCGCGTTCTATAGATC
CCCCTCTACTGTTCTCTCCCCGTCTCGATACTCCCCTTCCTTTTTCTCCC
CCTGTCACGCCACACAATACATATCATACCCCCACCCCCTCTGTTTCCTC
TTTATATTCCGCCTTACTTCGCCTACAATCAACATTTATTCATTACACCC
CCGATCTTTATTAGACTATCCTTTCCTACATCTACCCCCCCCCCGTTACT
TAGTCTATCCGTCTCCTCAAAATTATAAACCACCTACACCTCATATAATT
ATTCATACCGATATATCATATCCACTACTTACCCTCCCACCCCTTTTTAT
CTCCTCTCACTCCTCTTATCTTCTTCCCCTCAATTCCTTTCCCCCTCCCT
CTTATCTCTCTTTATTGACTCTCTTCTATACTTTTCACCATACAATATAA
TTCTATTCTAACACCGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_p02.b1 MSMg01no435_p02.b1 CHROMAT_FILE:
MSMg01no435_p02.b1 PHD_FILE: MSMg01no435_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:52 2005
         (438 letters)



>mm_chr5_132818640_132819478
          Length = 839

 Score =  745 bits (385), Expect = 0.0
 Identities = 421/433 (97%), Gaps = 4/433 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcttttgtgttttgtctcatgcagcccaggctggcctcaaacacgctgtatagtgaagat 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tcttttgtgttttgtctcatgcagcccaggctggcctcaaacacgctgtatagtgaagat 780

                                                                       
Query: 69  atgttcttcctgcctacctatgccaagtgctagatttacagtatgca-ccaccacatcca 127
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 779 atgttcttcctgcctacctatgccaagtgctagatttacagtatgcatacaccacatcca 720

                                                                       
Query: 128 ggttattatgtactgggaatgaaacacaggccttcacaaatgctaggcaagcactttgcc 187
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 719 ggttattatgtactgcgaatgaaacacaggccttcacaaatgccaggcaagcactttgcc 660

                                                                       
Query: 188 tgctgacccacatccctagctttagctttggtttttcgtatagtaaatatattaatttgt 247
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 659 tgctgacccacacccctagctttagctttggtttttcgtatagtagatatattaatttgt 600

                                                                       
Query: 248 tggatcttt-atatgaaatttgtccctggaaaaa-gaggacttggctcttggagggccat 305
           ||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 599 tggatcttttatatgaaatttgtccctggaaaaaagaggacttggcttttggagggccat 540

                                                                       
Query: 306 tcttcacattgagagcctgtgctcatgcagtatttgcattgtggggctcatgttgatttt 365
           |||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct: 539 tcttcacattgagagcctgtgctcatgcagtatt-gcattgtgaggctcatgctgatttt 481

                                                                       
Query: 366 aaaccttatacagagtattgttgtttagggccaccatggaaataaaatgaatcgtaccct 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaaccttatacagagtattgttgtttagggccaccatggaaataaaatgaatcgtaccct 421

                        
Query: 426 ttctgagatcata 438
           |||||||||||||
Sbjct: 420 ttctgagatcata 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 839
Length adjustment: 9
Effective length of query: 429
Effective length of database: 830
Effective search space:   356070
Effective search space used:   356070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)