BAC Information

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BAC

Clone NameMSMg01-436B08
Chromosome5 (Build37)
Map Location 104,049,349 - 104,049,782
singlet/doubletsinglet
Overlap geneSlc10a6
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13
Downstream gene1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436B08.T7 (MSMg01no436_b08.b1)MSMg01-436B08.TJ (MSMg01no436_b08.g1)
ACCAG527235AG527236
length761754
length of high quality
(start - end)		472 (53 - 524)434 (83 - 516)
definitionCHROMAT_FILE: MSMg01no436_b08.b1 PHD_FILE: MSMg01no436_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:03 2005CHROMAT_FILE: MSMg01no436_b08.g1 PHD_FILE: MSMg01no436_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTAGTGCTCGGTTGGCTAGGATTTCAGTACCAGGTAT
GTTTCTCCTCTTGTTGATTGTTCAGTAAGAGAGCTGCTGGCTACCTTTAA
GGTATGAGCTACTACGGCACCCTCAGGGTATCATGCCACGCTGGCTGCTG
CTGTGGATCATGGGCATAGTAGCCTGGTAGGACTGTTGGTGGCTTCCCTC
CTTTGGACGCTTGCATGGCACCTTCTGGTATCATGAAAGTTAGTTCTCAG
GGAGGAGGCATCCATATCAGACACCTCAGGGTCTCTGGGCCTTGTGTCCA
AGTGCACAGTATCTTCAGCAATAGGGACTTGCCTTCCATCTCTGGGAGAA
AGCCAATGTCAGTTGCAGTAAGCTGTGTTTCAGGAGCCTCTTGGACAACT
GTGACCAACAACTCAGACTAGGACTTCTCATGCCCAGTGTTAGGTTTTTG
CTGGTCGATGTGTGACTCTTGTGGGGAGCATTATCAGACTGGATGGNAAA
GTTTTATTTAAACTATGTATGTATATTTGTGTACCACCTTATATGCATGG
CAGATAGTATTAGGTAGATTATGGACAGCATGATTGCTTAACGCTTTTTC
CCGGGACCCTTAACGGGATTTTAACCCTTTCCCCCCCCCCCGGATTAAAA
TTCCCTCCCCCCGAAAAAAGACCCCCGTTTTTCCCCAGGGAGTCTTCTCA
AACCTTTGGGG

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGCCTGCACTGGAAG
GCGTGGCTTCCCCTTACACATCACACAGTTTCTGTGCATCTCCAGCTTGG
TTGCTGTCAGATCATTAGATCTTCTCTTGTCCTCACCACCATCGTTAAAT
GTATCATGGGATCAGATGATCCTGTGGAGGCCGGGGACAACAGCCTGGGG
ACTCGAGGTTTCACAACCACCAACACTTGGCTTTTTACAGCGAGGAATTT
CAGCCTTTTGCTGCTGGAGCCAAAACCATATGGGGGTGGCGTGGAACATT
CCACACTTCATAGTTCAAGATTAAACTGACGCAATGGAGAAGTCCTTCTA
GGACTCGGTAAACAGAGAGCCAAGGCATATAGCATAGGTCAAGTATTTGG
AAAACTTTCTTAGGTACCGTCTCTATGGAAACTGGCTTAGAGTGGCAGCA
AAATCTCCTTCTAGCTTAACAGGAAGATATCTGTGTTTTGGTTTTGGTGT
TGGAAAAGACCCCTAGAGCTTACTCACAATAAAAAATACTTTTTAGGCCT
TATTTGGAGGGAAAATTTTGCCCAATTTTTCTTTTTTTTTAATAAAAAAT
TGCCAACAAAATTTTTTTTTCAAACATTACCCCCATTTTTTTTTTTTCTT
CTCCTTTAAAATTGTTTTTATAAACTTCCGCCCTTTTGTTTTTTATTATT
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_b08.g1 MSMg01no436_b08.g1 CHROMAT_FILE:
MSMg01no436_b08.g1 PHD_FILE: MSMg01no436_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:04 2005
         (434 letters)



>mm_chr5_104049149_104049982
          Length = 834

 Score =  839 bits (434), Expect = 0.0
 Identities = 434/434 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctggcctgcactggaaggcgtggcttccccttacacatcacacagtttctgtgcatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cctggcctgcactggaaggcgtggcttccccttacacatcacacagtttctgtgcatctc 575

                                                                       
Query: 61  cagcttggttgctgtcagatcattagatcttctcttgtcctcaccaccatcgttaaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cagcttggttgctgtcagatcattagatcttctcttgtcctcaccaccatcgttaaatgt 515

                                                                       
Query: 121 atcatgggatcagatgatcctgtggaggccggggacaacagcctggggactcgaggtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atcatgggatcagatgatcctgtggaggccggggacaacagcctggggactcgaggtttc 455

                                                                       
Query: 181 acaaccaccaacacttggctttttacagcgaggaatttcagccttttgctgctggagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acaaccaccaacacttggctttttacagcgaggaatttcagccttttgctgctggagcca 395

                                                                       
Query: 241 aaaccatatgggggtggcgtggaacattccacacttcatagttcaagattaaactgacgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaaccatatgggggtggcgtggaacattccacacttcatagttcaagattaaactgacgc 335

                                                                       
Query: 301 aatggagaagtccttctaggactcggtaaacagagagccaaggcatatagcataggtcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aatggagaagtccttctaggactcggtaaacagagagccaaggcatatagcataggtcaa 275

                                                                       
Query: 361 gtatttggaaaactttcttaggtaccgtctctatggaaactggcttagagtggcagcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtatttggaaaactttcttaggtaccgtctctatggaaactggcttagagtggcagcaaa 215

                         
Query: 421 atctccttctagct 434
           ||||||||||||||
Sbjct: 214 atctccttctagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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