NCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTATCCTGGTTGGTGCTTCGATGAGTAAACTTCTGT
CTTTAATTGTAGAAGAAATATGGACTGAATTATTTCTGCTTTTTGGAATT
CAGATTCCTTCAAAGACCAGCTTGGCATTAGTTTCTGCACTCTCATGAAT
GTTTGGAGAGGAAAGCTCGTTTAAGAGAGCAAACCTCCTCGCATGTATGT
ATACGCAGACTTGACATGTCATCATATGACAGTGACGTGTTACTCACTGC
AATCAAGCTTACGTGTAGTTTAACTTATGCATAAAGTATCATGCTTTCTC
ATAGATCTCAGCATTTTTTCCTCATAAAATAATATTCATTTTCCTGGTTA
ATGTTTCTTTGCGATTTGTGTTGTTGTTTTGAGATGGGCCTTCAATGGCT
GGCCTAGGCTGCCCTCAAACTTGCAATCCTCCTGCCTCAGCCTGCTGAGT
GCAGCGATTACAGGCACATACTACCATCTTAACTTGAATCTTTAAAGCTC
TGCTGCTAACTCCCCTGCCTTTTTTCTCCTTTGTTTATGCATTTTTGTGG
AATCACTTTATCGATCCCTGCATCTTANACCTTAGTTGCGTTTTATGTGT
AGCATGCAGCTAGCTTCCAGTTTATTTTTGTTTTTTCAAGCTAGCCTGTT
TTCCCCAGTAACCCTGTGTGGACGTTTGAAAAAAATGGTCCN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATTTCTGAATATCTATGCTCCAA
ATGCAAGGGCATCCACATTCATTAAGGAAACTTTAGTAAAGCTCAAAGCA
CACATTGCACCTCACATAATAATAGTGGGAAACTTCAACACCCCACTCTC
ATCAATGGCAGATCCTGGACACAGAAACTAAACAGAGACACATTGAAACT
AACAGATGTTATGAAACAAATGTATTTAACAGATATCTACACAACATTTT
ATCCTAAAAAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTGCT
CCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAA
AATATTGAAATTATCCCATGCATCATATCAGATCACGGACTAAGGCTGAT
CTTCAATAACAACATAAATGATAGAAAGCCAACATTCACGTATAAGCTGA
ACAACACTCTACTCAATGATACCTTGGTCAAGGAAGAAATAAGGAAAGAG
ATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCGCAATATACCTAAA
CTTATGGGACACAATAAAAGCAGTGCTAAGAGGAAAACTCATAGCTCTGA
GTGCCACCTAANAGAAACTAGAAAGAGCCCCTCTAGCNGCTTGAAGGACA
CCTAAAACCCTATAACAAAGGGAGCGAATTCTCCTCCGAGAGAAAGACGG
GGGGAATAATCCAC

Query= MSMg01no436_b14.b1 MSMg01no436_b14.b1 CHROMAT_FILE:
MSMg01no436_b14.b1 PHD_FILE: MSMg01no436_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:05 2005
         (579 letters)



>mm_chr5_21055028_21056012
          Length = 985

 Score =  992 bits (513), Expect = 0.0
 Identities = 559/577 (96%), Gaps = 6/577 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtttatcctggttggtgcttcgatgagtaaacttctgtctttaattgtaga 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gaattctttgtttaaagtggttggtgcttcgatgagtaaacttctgtctttaattgtaga 518

                                                                       
Query: 65  agaaatatggactgaattatttctgctttttggaattcagattccttcaaagaccagctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agaaatatggactgaattatttctgctttttggaattcagattccttcaaagaccagctt 458

                                                                       
Query: 125 ggcattagtttctgcactctcatgaatgtttggagaggaaagctcgtttaagagagcaaa 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 457 ggcattagtttctgcactctcatgcatgtttggagaggaaagctcgtttaagagagcaaa 398

                                                                       
Query: 185 cctcctcg----catgt--atgtatacgcagacttgacatgtcatcatatgacagtgacg 238
           ||||||||     ||||  |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 397 cctcctcgtgtaaatgtgcatgtatacacagacttgacatgtcatcatatgacagtgacg 338

                                                                       
Query: 239 tgttactcactgcaatcaagcttacgtgtagtttaacttatgcataaagtatcatgcttt 298
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 337 tgttactcactgcaatcaagcttacatgtagtttaacttatgcataaagtatcatgcttt 278

                                                                       
Query: 299 ctcatagatctcagcattttttcctcataaaataatattcattttcctggttaatgtttc 358
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 277 ctcatagatctcagcattttttccacataaaataatattcattttcctggttaatatctc 218

                                                                       
Query: 359 tttgcgatttgtgttgttgttttgagatgggccttcaatggctggcctaggctgccctca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tttgcgatttgtgttgttgttttgagatgggccttcaatggctggcctaggctgccctca 158

                                                                       
Query: 419 aacttgcaatcctcctgcctcagcctgctgagtgcagcgattacaggcacatactaccat 478
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 157 aacttgcaatcctcctgcctcagcctgctgagtgcatcgattacaggcacatactaccat 98

                                                                       
Query: 479 cttaacttgaatctttaaagctctgctgctaactcccctgccttttttctcctttgttta 538
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 97  cttaacttgaatctttaaagctctgctgctaactcccctgcctttgttctcctttgttta 38

                                                
Query: 539 tgcatttttgtggaatcactttatcgatccctgcatc 575
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  tgcatttttgtggaatcactttatcgatccctgcatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 985
Length adjustment: 10
Effective length of query: 569
Effective length of database: 975
Effective search space:   554775
Effective search space used:   554775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)