Query= MSMg01no436_d02.b1 MSMg01no436_d02.b1 CHROMAT_FILE:
MSMg01no436_d02.b1 PHD_FILE: MSMg01no436_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:12 2005
(614 letters)
>mm_chr5_6872029_6873048
Length = 1020
Score = 1083 bits (560), Expect = 0.0
Identities = 601/618 (97%), Gaps = 8/618 (1%)
Strand = Plus / Minus
Query: 4 ggaattcaggaaa--ataccgtgaagaccttataaaatgggtatttgatcttgagctgtg 61
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ggaattcaggaaaagata-agtgaagaccttataaaatgggtatttgatcttgagctgtg 762
Query: 62 ttttacacaggtgtgtgtgtatatatgctttgaaattgagatgacattgttgacagcagg 121
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ttttacacaggtgtgtttgtatatatgctttgaaattgagatgacattgttgacagcagg 702
Query: 122 catagttaccatgaagaaatagaacataattcgtttcctggtgagaagtgtgccagcatg 181
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 701 catagttaccatgaagaaatagaagataattcgtttcctggtgagaagtgtgccagcatg 642
Query: 182 cagcatccattacaactcagaattatgcctaatcaatttcctttctataattttttcgca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 cagcatccattacaactcagaattatgcctaatcaatttcctttctataattttttcgca 582
Query: 242 catattcatattggttttctaaaatgttaatatatcagcctgttctgaatcttttcatca 301
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 581 catattcatattggttttctaaaatgttaatagaacagcctgttctgaatcttttcatca 522
Query: 302 catctatacacctacttccttttatgtttaggcttatgtgtaactttccacactattcaa 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 catctatacacctacttccttttatgtttaggcttatgtgtaactttccacactattcac 462
Query: 362 aatcatccaaacaattgcagagcttctaatgtgtagatacatatctatggtagatatgta 421
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 461 agtcatccaaacaattgcagagcttctaatgtgtagatacgtatctatggtagatatgta 402
Query: 422 aagggatagatttggttctcagcttcagagcttcagcgcagtgtaattgaggagacaagc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aagggatagatttggttctcagcttcagagcttcagcgcagtgtaattgaggagacaagc 342
Query: 482 caaagaacatcattatgcactaagcactgcagaaatcatatgctgtgaaaatccaaaact 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 caaagaacatcattatgcactaagcactgcagaaatcatatgctgtgaaaatccaaaact 282
Query: 542 aaaaac-----aaaaaagtgatttataaagaacagaggacaaatcatctaattttgaaaa 596
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 281 aaaaacaaaaaaaaaaagtgatttataaagaaaagaggacaaatcatctaattttgaaaa 222
Query: 597 gaatttatagaagttaac 614
||||||||||||||||||
Sbjct: 221 gaatttatagaagttaac 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1020
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1010
Effective search space: 610040
Effective search space used: 610040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_d02.g1 MSMg01no436_d02.g1 CHROMAT_FILE:
MSMg01no436_d02.g1 PHD_FILE: MSMg01no436_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:12 2005
(513 letters)
>mm_chr5_6715095_6716008
Length = 914
Score = 909 bits (470), Expect = 0.0
Identities = 503/514 (97%), Gaps = 1/514 (0%)
Strand = Plus / Plus
Query: 1 ttcagagaaaacccatgtgaattcagtatctttgaaatgagtgttttaaatacaacccat 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagagaaaacccatgtgaactcagtatctttgaaatgagtgttttaaatacaacccat 260
Query: 61 ttcgtctctaaaaggtcccctaatatccagaaaaaaaggtat-gaatttggtatcagatt 119
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tttgtctctaaaaggtcccctaatatccagaaaaaaaggtattgaatttggtatcagatt 320
Query: 120 gtttgtttttataatattaaagaaagtaaatactacttaagtttatttttaagtggaagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttgtttttataatattaaagaaagtaaatactacttaagtttatttttaagtggaagc 380
Query: 180 ttaaattgactgtgtaattaaaataatgaacatgcatttcatcatgagtatcatctttta 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaattggctgtgtaattaaaataatgaacatgcatttcatcatgagtatcatctttta 440
Query: 240 actgtcctcatgttagttgtgtattagttaaaactgcaaatagataatactatagcaata 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgtcctgatgttagttgtgtattagttaaaactgcaaatagataatactatagcaata 500
Query: 300 tggtatcttgagtatagacatctccctcaacctaataacttagggggaaaaatgagtgtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtatcttgagtatagacatctccctcaacctaataacttagggggaaaaatgagtgtg 560
Query: 360 gtctgagcatatataatattctaacgcttctaaagtgatgcagtgatatataaatataaa 419
||||||| |||||||||||||||| |||||||||||||||||| | ||||||||||||||
Sbjct: 561 gtctgagaatatataatattctaatgcttctaaagtgatgcagcgttatataaatataaa 620
Query: 420 acttacgaaaggtcctttacttatttttaataacaatgccattaataaagtgtaatcttt 479
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttatgaaaggtcctttatttatttttaataacaatgccattaataaagtgtaatcttt 680
Query: 480 agttcttcaaatagacagcaggtcagtttcgtgt 513
||||||||||||||||||||||||||||||||||
Sbjct: 681 agttcttcaaatagacagcaggtcagtttcgtgt 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space: 454712
Effective search space used: 454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
