BAC Information

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BAC

Clone NameMSMg01-436D10
Chromosome5 (Build37)
Map Location 48,457,957 - 48,602,584
singlet/doubletdoublet
Overlap geneSlit2
Upstream geneLOC100040865, LOC100040876
Downstream gene4933428G09Rik, Kcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436D10.T7 (MSMg01no436_d10.b1)MSMg01-436D10.TJ (MSMg01no436_d10.g1)
ACCAG527334AG527335
length733727
length of high quality
(start - end)		646 (52 - 697)625 (77 - 701)
definitionCHROMAT_FILE: MSMg01no436_d10.b1 PHD_FILE: MSMg01no436_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:13 2005CHROMAT_FILE: MSMg01no436_d10.g1 PHD_FILE: MSMg01no436_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,457,957 - 48,458,598)(48,601,960 - 48,602,584)
sequence
NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTCAGTATCGGTGATAGAAAGTAGATGCTAGTGTTGCT
TTCTGAATGTAGGGTGACTTAATTAAAAGATAGTTGAGCAAATATTAAAT
TGTATGGATTGTTAGCAGAGGAAGTACAGTAACTTAGACATTTAAATCAG
TTGCCATTCTAGAGCCGAAGTACACTCTGTCACTTCTACAGGAACTAAGC
CAAGTTTGGGCCTTTACATATAGTCTGGCTCCAATAAAATGTAAAAACAA
GAAGGAAAGAGATTGATCTGGTCAGACAAGTGATTTTCAGACTATTTCCT
CTATCTATTAAATCTTTGCTTTTTCCTTTTTGGTTCTTTTGTTTGTTTAA
AATAACAACAAAAATATTTGAAGCACAGAGATGATTCATACTTTATAAGA
AAAAATAATATTATTAACTATGTCAAAGTTTATTAGAAAAACACCTTGAG
TTCAGAAAGTATTATTTGAGTGCTGTTTAAGAAATCAGTTGTAAAACCAT
GAGGAAAAGGGAGGAGTGCCTGGCACATGTCACTCATTTGAAAAGGATTG
CTTATTTTGGGTAAAGTATTACTAGATACATTTTCATGGATATCACTCAT
AAAAAATAAGGGTTTTTTTGTTTATGCTGTTTGTTCTGTTTTTCAGTGAT
TCACCGTTGACTTCTCATACATTTTTTTTAATA

NNNCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGCGCAGTCCTTGGAAGGCA
TCTGGTGCAAGTTCAGAGATCTGGTTGTTGCTCAGGTCTCTACAACCAGA
AATAAGGTTGGGTTAAATGAGATAGGTTGCCATGGAAATCGGCCAGAGAA
GAGGACTTACTTGTATATGGTGTCTATGAAGACACATGTACCACTTTCAA
AATGAAACATCAGAGAATCGGAAAATTTAAAGATGAAACCCATTCTGTGA
AACAACTACTGTCCATTTGCTTAAGTTATTAGTAAGGACGGCATCTTTAC
AGAATAGCATACCAACGATGTCATGACCATTTTTTCTTTTTGGTGGGAAT
CAATAAACTAAATTACAGTGAACATTAAAAATTACAAGGTTTCACTAGTA
AGATTAAAATGCAGTTATACAACTGGCAATCAGCCTGTCATTAAGCTGTC
AATCTCTTCAATGGCTATGCTTAATTATTCTTGCATAGTCTTGACCTACA
TAATTTGACAAATGACATATCTTTGCACTGCCCTGTTAACTCACAGTCGT
CTAAGCTTTTTGTATGGTGAGAAGGCTCCTGGAGGGATGACCCTGATGGA
GTTCTGTTCCAAACGTCTGTGACGAAAAAACAAAACAAAACACTGTTTAG
AAGGACAAGTAAAACTCTAGACACATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_d10.b1 MSMg01no436_d10.b1 CHROMAT_FILE:
MSMg01no436_d10.b1 PHD_FILE: MSMg01no436_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:13 2005
         (646 letters)



>mm_chr5_48457754_48458799
          Length = 1046

 Score = 1180 bits (610), Expect = 0.0
 Identities = 634/642 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcagtatcggtgatagaaagtagatgctagtgttgctttctgaatgtaggg 63
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 ggaattctttcagtatcggtgatagaaagtagatgctaatgttgctttctgaatgtaggg 263

                                                                       
Query: 64  tgacttaattaaaagatagttgagcaaatattaaattgtatggattgttagcagaggaag 123
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 tgacttaattaaaagacagttgagcagatattaaattgtatggattgttagcagaggaag 323

                                                                       
Query: 124 tacagtaacttagacatttaaatcagttgccattctagagccgaagtacactctgtcact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacagtaacttagacatttaaatcagttgccattctagagccgaagtacactctgtcact 383

                                                                       
Query: 184 tctacaggaactaagccaagtttgggcctttacatatagtctggctccaataaaatgtaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctacaggaactaagccaagtttgggcctttacatatagtctggctccaataaaatgtaa 443

                                                                       
Query: 244 aaacaagaaggaaagagattgatctggtcagacaagtgattttcagactatttcctctat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaacaagaaggaaagagattgatctggtcagacaagtgattttcagactatttcctctat 503

                                                                       
Query: 304 ctattaaatctttgctttttcctttttggttcttttgtttgtttaaaataacaacaaaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctattaaatctttgctttttcctttttggttcttttgtttgtttaaaataacaacaaaaa 563

                                                                       
Query: 364 tatttgaagcacagagatgattcatactttataagaaaaaataatattattaactatgtc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatttgaagcacagagatgattcatactttataagaaaaaataatattattaactatgtc 623

                                                                       
Query: 424 aaagtttattagaaaaacaccttgagttcagaaagtattatttgagtgctgtttaagaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaagtttattagaaaaacaccttgagttcagaaagtattatttgagtgctgtttaagaaa 683

                                                                       
Query: 484 tcagttgtaaaaccatgaggaaaagggaggagtgcctggcacatgtcactcatttgaaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcagttgtaaaaccatgaggaaaagggaggagtgcctggcacatgtcactcatttgaaaa 743

                                                                       
Query: 544 ggattgcttattttgggtaaagtattactagatacattttcatggatatcactcataaaa 603
           ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
Sbjct: 744 ggattgcttattttgggtaaagtattattggatacattttcatggatatcactcataaga 803

                                                     
Query: 604 aataagggtttttttgtttatgctgtttgttctgtttttcag 645
           |||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 804 aataagggttttcttgttcatgctgtttgttctgtttttcag 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no436_d10.g1 MSMg01no436_d10.g1 CHROMAT_FILE:
MSMg01no436_d10.g1 PHD_FILE: MSMg01no436_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:13 2005
         (625 letters)



>mm_chr5_48601760_48602784
          Length = 1025

 Score = 1178 bits (609), Expect = 0.0
 Identities = 621/625 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagagcgcagtccttggaaggcatctggtgcaagttcagagatctggttgttgctcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 agagagcgcagtccttggaaggcatctggtgcaagttcagagatctggttgttgctcagg 766

                                                                       
Query: 61  tctctacaaccagaaataaggttgggttaaatgagataggttgccatggaaatcggccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tctctacaaccagaaataaggttgggttaaatgagataggttgccatggaaatcggccag 706

                                                                       
Query: 121 agaagaggacttacttgtatatggtgtctatgaagacacatgtaccactttcaaaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agaagaggacttacttgtatatggtgtctatgaagacacatgtaccactttcaaaatgaa 646

                                                                       
Query: 181 acatcagagaatcggaaaatttaaagatgaaacccattctgtgaaacaactactgtccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 acatcagagaatcggaaaatttaaagatgaaacccattctgtgaaacaactactgtccat 586

                                                                       
Query: 241 ttgcttaagttattagtaaggacggcatctttacagaatagcataccaacgatgtcatga 300
           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 585 ttgcttaagttattagtaaggacgacatctttacagaatagcataccatcgatgtcatga 526

                                                                       
Query: 301 ccattttttctttttggtgggaatcaataaactaaattacagtgaacattaaaaattaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ccattttttctttttggtgggaatcaataaactaaattacagtgaacattaaaaattaca 466

                                                                       
Query: 361 aggtttcactagtaagattaaaatgcagttatacaactggcaatcagcctgtcattaagc 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 465 aggtttcactagtaagattaaaatgcagttattcaactggcaatcagcctgtcattaagc 406

                                                                       
Query: 421 tgtcaatctcttcaatggctatgcttaattattcttgcatagtcttgacctacataattt 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 405 tgtcaatctcttcaatggctatgcttaattattcctgcatagtcttgacctacataattt 346

                                                                       
Query: 481 gacaaatgacatatctttgcactgccctgttaactcacagtcgtctaagctttttgtatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gacaaatgacatatctttgcactgccctgttaactcacagtcgtctaagctttttgtatg 286

                                                                       
Query: 541 gtgagaaggctcctggagggatgaccctgatggagttctgttccaaacgtctgtgacgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtgagaaggctcctggagggatgaccctgatggagttctgttccaaacgtctgtgacgaa 226

                                    
Query: 601 aaaacaaaacaaaacactgtttaga 625
           |||||||||||||||||||||||||
Sbjct: 225 aaaacaaaacaaaacactgtttaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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