Query= MSMg01no436_e01.b1 MSMg01no436_e01.b1 CHROMAT_FILE:
MSMg01no436_e01.b1 PHD_FILE: MSMg01no436_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:16 2005
(587 letters)
>mm_chr5_58172296_58173283
Length = 988
Score = 1106 bits (572), Expect = 0.0
Identities = 584/588 (99%), Gaps = 1/588 (0%)
Strand = Plus / Plus
Query: 1 aagtcattcactctctgaagtaagagcaaaccatttaaggtgagaaaggggtattcatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtcattcactctctgaagtaagagcaaaccatttaaggtgagaaaggggtattcatta 260
Query: 61 tgatggcatttcctttcctggctgatttggtgggtaatatctaaaagcttctgttcttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatggcatttcctttcctggctgatttggtgggtaatatctaaaagcttctgttcttta 320
Query: 121 gcaatgtgtaaataatattgacaaatgtgactgtgaatatatgtgtgcacacaactcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaatgtgtaaataatattgacaaatgtgactgtgaatatatgtgtgcacacaactcaca 380
Query: 181 catcaaataatttaattatgatcaagaatgatatttacataagcttcaagaaaacagcat 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 catcaaataatttaattatgatcaagaatgatatctacataagcttcaagaaaacagcat 440
Query: 241 accatgtttatttatagtggcttacgaaatgtataattgtgcttattttt-aaaaaaaaa 299
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 accatgttcatttatagtggcttacgaaatgtataattgtgcttatttttaaaaaaaaaa 500
Query: 300 catgtcccaaagggaggcagttgctcctatgtttgaaagtaaaaataaaatagtaatttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgtcccaaagggaggcagttgctcctatgtttgaaagtaaaaataaaatagtaatttt 560
Query: 360 tgtgcaaacagtgtagtgaaaaatagatttgttaggaaccctactcttaacttgggtccc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgcaaacagtgtagtgaaaaatagatttgttaggaaccctactcttaacttgggtccc 620
Query: 420 tgagttaagaatatcacttattcatatgcaatttcatataacaagattcctatctccagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagttaagaatatcacttattcatatgcaatttcatataacaagattcctatctccagg 680
Query: 480 ttctactttcttccatgtgaagagagcaaagttcagattactacttcacaaggtctttgt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctactttcttccatgtgaagagagcaaagttcagattactacttcacaaggtctttgt 740
Query: 540 aaggttaaattaaaagccacatactatattttaataaacattcttgtg 587
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 aaggttaaattaaaagccacatacgatattttaataaacattcttgtg 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_e01.g1 MSMg01no436_e01.g1 CHROMAT_FILE:
MSMg01no436_e01.g1 PHD_FILE: MSMg01no436_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:16 2005
(503 letters)
>mm_chr5_58331111_58332013
Length = 903
Score = 944 bits (488), Expect = 0.0
Identities = 500/504 (99%), Gaps = 2/504 (0%)
Strand = Plus / Minus
Query: 1 tcgaggtttaagtaccgtgtaggcttgttgaattaaaagaatatctccatattaaaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcgaggtttaagtaccgtgtaggcttgttgaattaaaagaatatctccatattaaaaact 644
Query: 61 caattatctgatgggataggaccttttttttaggaagtttggtgaagtttcttaccttta 120
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 643 caattatctgatgggataggacc-tttttttaggaagtttggtgatgtttcttaccttta 585
Query: 121 tctgttgtgtatttaactt-aaaaatgttacacaaaacatttgaaagtttaaattctttt 179
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tctgttgtgtatttaacttaaaaaatgttacacaaaacatttgaaagtttaaattctttt 525
Query: 180 ctaaaattaaagcctacatattttaaattaaaccaatttattcataaatttaaatacttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctaaaattaaagcctacatattttaaattaaaccaatttattcataaatttaaatacttc 465
Query: 240 agagtgattattttaggatcagcatttatctttggatgaatcaaatgtgggaatcttgca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agagtgattattttaggatcagcatttatctttggatgaatcaaatgtgggaatcttgca 405
Query: 300 agccaggaaaaaaaaattatagaatccacatgctctgagtctgcagccagatagttccat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agccaggaaaaaaaaattatagaatccacatgctctgagtctgcagccagatagttccat 345
Query: 360 ttaacatggtgaaatagactattttctgcatacaaatccctaatatacgaaagcttttaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttaacatggtgaaatagactattttctgcatacaaatccctaatatacgaaagcttttaa 285
Query: 420 taagtaactaaatcttttcttagttttaaggaaaaaccaaagggtagattactataatgt 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 284 taagtaactaaatcttttcttagttttaaggaaaaaccaaagggtggattactataatgt 225
Query: 480 gtatagcattgtgagaaataagaa 503
||||||||||||||||||||||||
Sbjct: 224 gtatagcattgtgagaaataagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
