NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGCCAGTAACCTCCCTCAGAGATTAAGCCAGATGGCAGAAAAC
TGGCTTCGAAACACCTGAGCTTCAAATCCCAAGGACCAAGAGACCTGAAA
TTTTCCTCCTAGGCTCCATCATCACACAGAGCTGATGCCAAACAGCAGAA
CCACCCTTTCCAAACCAGGGGAATACAAAAAGGGCACACGATTTTGTAAT
AAGCCTTTAAGAATAACAGCTGTAATGTTGTGACTAGAGAAAATTCAATG
GGAAACAAAAATTTGAAAATTTGTTTTGAAAAAGTTGACGTTGCGACTAG
CATTTTAAATACACATGAAAAATTTTCTTGTGGTACAAGTGATTATCTAG
TGTGTGGCACCTGGAAGTAATGAATCCAATTCCTGAGAGTTATACACCAT
CCTTACATACTCAAGACACACTGACGCTACAAAATGTTCTACTCTGTGGT
CAAGCAAACCGGACCCAATACCAGCATACCCATTATTCTGCGTTTCAATT
TCTGAAAATGAAGAGTGATAGGCATAATATTTGACTTAAAATTCTAAGAT
TCCTTCTAGTATAAGATCACTCGCATTACGATGCTAACTAAATCTAAGTA
AATAGATGCTTATCATATATTTAGTAAATATCATCTGAAGATTGGTTGAC
CACCACTCCCATTTTGTAAATAAACATGGAAATTCAGTATCTGTGAAGGG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATAATTATTATTTTACAGGCAGATAGG
CAGTCAGACAGACAGATACACACACACACACACACAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGACATGTGGGATTAATATCTATGATG
TGACTGGCCACAGGAGAAAGCTGACCCTTCTTCCTTCAAGGACATTGACT
GCTTGTAGCTCTTTACTTAGATAAGGAGCTTAGTGAAATTCCACCAACCA
CATGGCATACTGACTGTTATGTTCATTATGTTGAGCTTGGTCACAAAACT
AAATCGTTTGAAATTTTGTGAATACAGGTTGTCTTATATCTAGAAGGCAC
TTCCCAGCAGTTCATAGCCCCAAGTCTTTTTTTAAAAAAAATTCTTTCTC
CTCATCTGCAAGGTTTCCAGAGCAACAGCTGAAGAGGTTACTCATGGTCA
TTTAGTTTCAGAATTTTGACCAGTTTTTGTTCATGTAGGGTCCTCTGTCT
ACTGCAAATAGAAGCTTCTTTGATGAGAGGTAAGAGCCACTTTTATCTAT
GAGTATAAAGGTATGTTTTTAGAAGCTATATTGTTTGACAAAATGGGATC
AGTTGGTTCTCCTTCAGGGTTCATGACATGTATAGAAATGGGTTCTTGTG
GTGGAAAATGTACTATCACGTCTTGATTTCCTCTTCTTATCAACTCATG

Query= MSMg01no436_e15.b1 MSMg01no436_e15.b1 CHROMAT_FILE:
MSMg01no436_e15.b1 PHD_FILE: MSMg01no436_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:19 2005
         (664 letters)



>mm_chr5_81588802_81589865
          Length = 1064

 Score = 1268 bits (656), Expect = 0.0
 Identities = 662/664 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agattaagccagatggcagaaaactggcttcgaaacacctgagcttcaaatcccaaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 agattaagccagatggcagaaaactggcttcgaaacacctgagcttcaaatcccaaggac 805

                                                                       
Query: 61  caagagacctgaaattttcctcctaggctccatcatcacacagagctgatgccaaacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caagagacctgaaattttcctcctaggctccatcatcacacagagctgatgccaaacagc 745

                                                                       
Query: 121 agaaccaccctttccaaaccaggggaatacaaaaagggcacacgattttgtaataagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agaaccaccctttccaaaccaggggaatacaaaaagggcacacgattttgtaataagcct 685

                                                                       
Query: 181 ttaagaataacagctgtaatgttgtgactagagaaaattcaatgggaaacaaaaatttga 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttacgaataacagctgtaatgttgtgactagagaaaattcaatgggaaacaaaaatttga 625

                                                                       
Query: 241 aaatttgttttgaaaaagttgacgttgcgactagcattttaaatacacatgaaaaatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaatttgttttgaaaaagttgacgttgcgactagcattttaaatacacatgaaaaatttt 565

                                                                       
Query: 301 cttgtggtacaagtgattatctagtgtgtggcacctggaagtaatgaatccaattcctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttgtggtacaagtgattatctagtgtgtggcacctggaagtaatgaatccaattcctga 505

                                                                       
Query: 361 gagttatacaccatccttacatactcaagacacactgacgctacaaaatgttctactctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagttatacaccatccttacatactcaagacacactgacgctacaaaatgttctactctg 445

                                                                       
Query: 421 tggtcaagcaaaccggacccaataccagcatacccattattctgcgtttcaatttctgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggtcaagcaaaccggacccaataccagcatacccattattctgcgtttcaatttctgaa 385

                                                                       
Query: 481 aatgaagagtgataggcataatatttgacttaaaattctaagattccttctagtataaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatgaagagtgataggcataatatttgacttaaaattctaagattccttctagtataaga 325

                                                                       
Query: 541 tcactcgcattacgatgctaactaaatctaagtaaatagatgcttatcatatatttagta 600
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 tcactcgcattacgatgctaactaaatctaaataaatagatgcttatcatatatttagta 265

                                                                       
Query: 601 aatatcatctgaagattggttgaccaccactcccattttgtaaataaacatggaaattca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatatcatctgaagattggttgaccaccactcccattttgtaaataaacatggaaattca 205

               
Query: 661 gtat 664
           ||||
Sbjct: 204 gtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no436_e15.g1 MSMg01no436_e15.g1 CHROMAT_FILE:
MSMg01no436_e15.g1 PHD_FILE: MSMg01no436_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:19 2005
         (332 letters)



>mm_chr5_81423360_81424091
          Length = 732

 Score =  611 bits (316), Expect = e-179
 Identities = 328/332 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccttcttccttcaaggacattgactgcttgtagctctttacttagataaggagcttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccttcttccttcaaggacattgactgcttgtagctctttacttagataaggagcttag 260

                                                                       
Query: 61  tgaaattccaccaaccacatggcatactgactgttatgttcattatgttgagcttggtca 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 tgaaattccaccaaccacatggcatactgactgttatggtcattatgttgagcttggtca 320

                                                                       
Query: 121 caaaactaaatcgtttgaaattttgtgaatacaggttgtcttatatctagaaggcacttc 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaactaaatcatttgaaattttgtgaatacaggttgtcttatatctagaaggcacttc 380

                                                                       
Query: 181 ccagcagttcatagccccaagtctttttttaaaaaaaattctttctcctcatctgcaagg 240
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 381 ccagcagttcatagccccaagtctttttaaaaaaaaaattctttctcctcatctgcaagg 440

                                                                       
Query: 241 tttccagagcaacagctgaagaggttactcatggtcatttagtttcagaattttgaccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccagagcaacagctgaagaggttactcatggtcatttagtttcagaattttgaccag 500

                                           
Query: 301 tttttgttcatgtagggtcctctgtctactgc 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 tttttgttcatgtagggtcctctgtctactgc 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)