BAC Information

Click to search

BAC

Clone NameMSMg01-436G16
Chromosome5 (Build37)
Map Location 60,361,584 - 60,362,158
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436G16.T7 (MSMg01no436_g16.b1)MSMg01-436G16.TJ (MSMg01no436_g16.g1)
ACCAG527489AG527490
length750757
length of high quality
(start - end)
574 (74 - 647)226 (326 - 551)
definitionCHROMAT_FILE: MSMg01no436_g16.b1 PHD_FILE: MSMg01no436_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:29 2005CHROMAT_FILE: MSMg01no436_g16.g1 PHD_FILE: MSMg01no436_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCG
GAATTCCATACAATGTACTAACATTATAATTATCCACAACTCCTTTCCTA
ACCTTCCATCTAGAAGCACTCCCTACTGCACAACTTATTGTCCTATTTTT
TTCATTAATTTAATAACCCATCAACTCCAATTTGTTCTGTTCATAAACTC
CTAGATGTGAGATCTCTGCTGACACAATTATGTCAATATTACCTATGCTA
TAGTCATTGGAATAAGGGGATCTTAATTTGAAAATGCTCCCAAACATATT
GACATGTGATCAAGCCTGATGTATATTTTATTAATTAAAAGTTATGTGTG
TTATGCATGTTCCAGAAGAGTTGGTGCTACCCTTGGGTGAGCAATTGTTT
TACAAGAAGGTAGGCTGAGAAAACCATAAGGAGTAACCCAGTAAGCCTCA
CTTCTCTTCAACTTTTTGATGAGTTTCTGGCCTTAGTTTCTTACCTTGAA
ATCCTGGACTGTTCTCTTTCATTAGTAGACTATAAAATAGAAGTGGATGT
GGTCATGAACCTGGATGTGGAAGTCCAAGTGGAAGAAGTAGAAGGGCAGC
AATCCCTTCCTCTGTCAGTTGCTTTTGGTCACAATATTTTATCACAGCAA
AAGGAAGTTAACATAGACCCACCTACTGGAACTTGCTCATCCTATTAATA
GCCGCACCCTTAACAATATTGACTCACCTTTTCTCAGAATCTATCAACTA

NCAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAAATCTCTCTTTATTCTTCACAATACG
ATTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG
CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC
ACTCCCCCTTTTAGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTT
TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT
TTGATATATATGCAGCTATATTCAAGAGCTCCGGGGTACTGGTTAGCTCA
TAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTAC
TTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACT
GTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAG
ACAGCTACATCTGCGTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGC
CGTCAGCGTTTGGATGCTGATTATGTGTCCAATCCCCTCTTTCTTCTCTA
TTCCTCTTTTCTCCTCTTACTCTTTTCCCACACCCTTTTCCTCATATCAC
AACTTTTTTTATATTATTATCTCCTAATCTACTACCTTATCATCTCTCCT
TATCCCTTATACTTTCTACCCACTTACTCTTATATATTTTTTTCTTCTTA
TCTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_g16.b1 MSMg01no436_g16.b1 CHROMAT_FILE:
MSMg01no436_g16.b1 PHD_FILE: MSMg01no436_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:29 2005
         (574 letters)



>mm_chr5_60361384_60362358
          Length = 975

 Score = 1073 bits (555), Expect = 0.0
 Identities = 570/575 (99%), Gaps = 1/575 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttataattatccacaactcctttcctaaccttccatctagaagcactccctactgcacaa 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttataattacccacaactcctttcctaaccttccatctagaagcactccctactgcacaa 260

                                                                       
Query: 61  cttattgtcctattttttt-cattaatttaataacccatcaactccaatttgttctgttc 119
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttattgtcctattttttttcattaatttaataacccatcaactccaatttgttctgttc 320

                                                                       
Query: 120 ataaactcctagatgtgagatctctgctgacacaattatgtcaatattacctatgctata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaactcctagatgtgagatctctgctgacacaattatgtcaatattacctatgctata 380

                                                                       
Query: 180 gtcattggaataaggggatcttaatttgaaaatgctcccaaacatattgacatgtgatca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcattggaataaggggatcttaatttgaaaatgctcccaaacatattgacatgtgatca 440

                                                                       
Query: 240 agcctgatgtatattttattaattaaaagttatgtgtgttatgcatgttccagaagagtt 299
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcctgaggtatattttattaattaaaagttatgtgtgttatgcatgttccagaagagtt 500

                                                                       
Query: 300 ggtgctacccttgggtgagcaattgttttacaagaaggtaggctgagaaaaccataagga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 ggtgctacccttgggtgagcaattgttttacaagaaggtaggctgagaaaaccatgagga 560

                                                                       
Query: 360 gtaacccagtaagcctcacttctcttcaactttttgatgagtttctggccttagtttctt 419
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaacccagtaagcctcactcctcttcaactttttgatgagtttctggccttagtttctt 620

                                                                       
Query: 420 accttgaaatcctggactgttctctttcattagtagactataaaatagaagtggatgtgg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accttgaaatcctggactgttctctttcattagtagactataaaatagaagtggatgtgg 680

                                                                       
Query: 480 tcatgaacctggatgtggaagtccaagtggaagaagtagaagggcagcaatcccttcctc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcatgaacctggatgtggaagtccaagtggaagaagtagaagggcagcaatcccttcctc 740

                                              
Query: 540 tgtcagttgcttttggtcacaatattttatcacag 574
           |||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtcagttgcttttggtcacaatattttatcacag 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space:   544260
Effective search space used:   544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)