Query= MSMg01no436_h02.b1 MSMg01no436_h02.b1 CHROMAT_FILE:
MSMg01no436_h02.b1 PHD_FILE: MSMg01no436_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:31 2005
(478 letters)
>mm_chr5_90117412_90118289
Length = 878
Score = 727 bits (376), Expect = 0.0
Identities = 458/508 (90%), Gaps = 38/508 (7%)
Strand = Plus / Plus
Query: 5 gaattctgttatttcctgtttaatactagagtatttgttgtgcagaaccagacaaacaga 64
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gaattctgttattgcctatttaatactagagtatttgttgtgcagaaccagacaaacaga 190
Query: 65 ttgttaaatatggggtccatctcatggatcttgtctggagaaatgagagaagaaattcag 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 191 ttgttaaatatggggtccatctcatggatctggtctggagaaatgagagaagaaattcag 250
Query: 125 tacagcaaggcagcatggtactcagctgagctggtctgaatcctatgtagcgtggtactc 184
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 251 tacagcaaggcagcgtggtactcatctgagctggtctgaatcctatgtagcgtggtactc 310
Query: 185 agctgagctggtctgaatcctatgtagcatggtactcagctgagctggtctgaatcctat 244
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 311 agctgagctggtctgaatcctatgtagcgtggtactcagctgagctggtctgaatcctat 370
Query: 245 gta------------gc------------------atg-------gtactcagctaagct 267
||| || ||| |||||||||||||||
Sbjct: 371 gtattgtggtactcagctgagctggtctgaatcctatgtattgtggtactcagctaagct 430
Query: 268 ggtctgtattcctatgtttttggaagaagcacttaccatccctgtgtttcaatttcacca 327
|||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 431 ggtctgaat-cctatgtttttggaagaagcacttaccatccctgtgtctcaatttcacca 489
Query: 328 tcagtataatgaagattaaaaatagtactgacatcatagagctgctgtgagtatggacac 387
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tcattataatgaatattaaaaatagtactgacatcatagagctgctgtgagtatggacac 549
Query: 388 acagatcgaccaagcattcagtagagcagtatcatctacaacacagtgtaattaggtata 447
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 550 acagatcgatcaagcattcagtagagcagtagcatctacaacacagtgtaattaggtata 609
Query: 448 cagatggatgtgattaactgagttcttg 475
||||||||||||||||||||||||||||
Sbjct: 610 cagatggatgtgattaactgagttcttg 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_h02.g1 MSMg01no436_h02.g1 CHROMAT_FILE:
MSMg01no436_h02.g1 PHD_FILE: MSMg01no436_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:31 2005
(420 letters)
>mm_chr5_90313420_90314239
Length = 820
Score = 700 bits (362), Expect = 0.0
Identities = 408/424 (96%), Gaps = 4/424 (0%)
Strand = Plus / Minus
Query: 1 caaatgatcgacactaac-ac-cacacacacacacacacacacacacacacacacacaca 58
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 696 caaatgatcgacactaacaacacacacacacacacacacacacacacacacacacacaca 637
Query: 59 cacacacacacaca--gagtcaaggccaaacggtctgaagcacattttcctgaaagttcc 116
|||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 636 cacacacacacacacggagttaaggccaaacggtctgaagcatattttcctgaaagttcc 577
Query: 117 ctgaattgcttgttgtacaaaaaaagcattcagtgacagacaacagacaccactctagag 176
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 576 ctgaattgcttgttgtacaaaaaaagcattcagtgacagacaacaaacaccactctagag 517
Query: 177 gcaagggcagtacattatttgtcaacacttgaggtcagagagctttagaaaaagctctca 236
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gcaagagcaatacattatttgtcaacacttgaggtcagagagctttagaaaaagctctca 457
Query: 237 aacagaaatacctaaaacgggaagaaataaaaatggcgttccaggaccttcaaaagttag 296
||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 456 aacagaaatacctaaaatgggaagaaataaaaatggcgttccaggacctgccaaagttag 397
Query: 297 atagctgttgggacgggagggtcctagaacccaggtctgtttgtcctccactgtcctttg 356
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 396 atagctgttgggaagggagggtcctagaacccaggtctgtttgtcctccattgtcctttg 337
Query: 357 acctgcctgtatacaatggtcaagtttttaagttatgccatgctgaggcatatttgcttt 416
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 336 acctgcctgtatacaatggtcaagtttttaagttatgccacgctgaggcgtatttgcttt 277
Query: 417 aaag 420
||||
Sbjct: 276 aaag 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
