BAC Information

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BAC

Clone NameMSMg01-436N15
Chromosome5 (Build37)
Map Location 108,947,967 - 108,948,525
singlet/doubletsinglet
Overlap geneCplx1
Upstream gene1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557
Downstream geneLOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436N15.T7 (MSMg01no436_n15.b1)MSMg01-436N15.TJ (MSMg01no436_n15.g1)
ACCAG527821AG527822
length745753
length of high quality
(start - end)		558 (74 - 631)545 (77 - 621)
definitionCHROMAT_FILE: MSMg01no436_n15.b1 PHD_FILE: MSMg01no436_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:02 2005CHROMAT_FILE: MSMg01no436_n15.g1 PHD_FILE: MSMg01no436_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACAGCCATACCANACACAGCAATAGATTTGGAGCGGGTGGTC
TCAGACACACTTGGAGTCCCTTGACATCATCTGTAATGCACTTTCCAGAG
TCCCATCTTTCCCTGATCCCACCTCTCCCTGGTGGCCTCCTGTCCTCTTC
ATGTGGGCAGGCAGTCTCCTAGGATCTTCCTGGCTTTACCCCTGGACACC
TACCTTCCAAATGCCCGTCTTCCTAAAAGCCCTGGGTTCTGGTGATTCCC
GCCCGTGCAGAGCAGACAGAGGTTCTCATAATCAAGTGTCCCACCCTCTC
CACTATTCCTCCTCTGAAGGGCTGACAGTGGCCGGTAAATGCAAGCTCCT
GGGCTTGGGCTGTGGTGTTTTGTTCTGTGTGTGGCCCAGGGGCAGTATGA
CCCAACTACTCCCCTTTGCCCAGCCAGCAGCCATTGTTCTTCATATTTGT
TTAATTTACATCATAATATGTTGAATCTCAGGTAAATGAGGTCTGTATTT
GGTAAGTTTTATCTCGACAGAAAGGCCAGCCTGGTCTTCCCATAACCCTT
CCTGTCCACAGTAAAACTGAATTAAGTGTCCACGAGTTTTGGGCCAGGTG
TGTGGCTTAGCATTGACCTTCATGACCTTACATAGCTCTTTATAGAAGTC
ATAACAATTAGACTGCTATACTATTCAGAATGCCCTCTGCCCAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAAAAACACAAAACTGTAAGTC
ATATGTATGTAAAGGACCTGCAAGGTTAAAAAAATATATATCCTGACTTA
ACCTTATGAAACAAAGAACTTGATCTTAGCCAAAAGGCTGAGAAGCAATA
ACAAAGAACCTCCAAAGAAGCTCCTGAGTTCATTTTCTGTTGGCCATCTA
CTGCTGGGCGTGGGGCCTACCCTCAAGGATAGTCTGTTTCCTCAGTGAGA
CTTCCTTGGAGAAAACTAAAAATAACCTTCATTTGCAAGTGGCTATCAGT
TGGAGATAGCTTCTGGGTTAGGAATGAAGGCATGTGTCCTCTTCTCCTTT
TAGTTCAAGGACCCCACTCAGGAAGAGATCCACACAGGCACTGTGTGTGC
TGACACAGTCTTTGTGAGTTCATATGTGTGCCAGCCTTGTTATGTCTAGA
AGGCCTTAATTCCTTGGTGCTCACCATCCTTTCTGGGTCTTACACTCTTT
CTACCCCATCTTCCACAGAGTTTCCTGAGCTCTGAGGGGAGGGATTTGAT
GAAACATCCCTTTAGAGCTGAGTGTTCCAATCTCCCTCTCCCCTCCCCCT
CTTTTTTTTTTTTCTTTTTCCATTTCCATCCTTTCTCTCCTTTATTAATT
TCTCTTCGCACTTCTTATTCTTTACCATTCATATCTCTTATTACTCTTAT
TAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_n15.b1 MSMg01no436_n15.b1 CHROMAT_FILE:
MSMg01no436_n15.b1 PHD_FILE: MSMg01no436_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:02 2005
         (558 letters)



>mm_chr5_108947767_108948725
          Length = 959

 Score = 1027 bits (531), Expect = 0.0
 Identities = 552/559 (98%), Gaps = 1/559 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcaatagatttggagcgggtggtctcagacacacttggagtcccttgacatcatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 759 acagcaatagatttggagcgggtggtctcagacacacttggagtcccttgacatcgtctg 700

                                                                       
Query: 61  taatgcactttccagagtcccatctttccctgatcccacctctccctggtggcctcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 taatgcactttccagagtcccatctttccctgatcccacctctccctggtggcctcctgt 640

                                                                       
Query: 121 cctcttcatgtgggcaggcagtctcctaggatcttcctggctttacccctggacacctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cctcttcatgtgggcaggcagtctcctaggatcttcctggctttacccctggacacctac 580

                                                                       
Query: 181 cttccaaatgcccgtcttcctaaaagccctgggttctggtgattcccgcccgtgcagagc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cctccaaatgcccgtcttcctaaaagccctgggttctggtgattcccgcccgtgcagagc 520

                                                                       
Query: 241 agacagaggttctcataatcaagtgtcccaccctctccactattcctcctctgaagggct 300
           |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agacagagggccgcataatcaagtgtcccaccctctccactattcctcctctgaagggct 460

                                                                       
Query: 301 gacagtggccggtaaatgcaagctcctgggcttgggctgtggtgttttgttctgtgtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gacagtggccggtaaatgcaagctcctgggcttgggctgtggtgttttgttctgtgtgtg 400

                                                                       
Query: 361 gcccaggggcagtatgacccaactact-cccctttgcccagccagcagccattgttcttc 419
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 399 gcccaggggcagtatgacccaactactccccctttgcccagccagcagccattgttcttc 340

                                                                       
Query: 420 atatttgtttaatttacatcataatatgttgaatctcaggtaaatgaggtctgtatttgg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atatttgtttaatttacatcataatatgttgaatctcaggtaaatgaggtctgtatttgg 280

                                                                       
Query: 480 taagttttatctcgacagaaaggccagcctggtcttcccataacccttcctgtccacagt 539
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taagttttatcttgacagaaaggccagcctggtcttcccataacccttcctgtccacagt 220

                              
Query: 540 aaaactgaattaagtgtcc 558
           |||||||||||||||||||
Sbjct: 219 aaaactgaattaagtgtcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space:   520052
Effective search space used:   520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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