BAC Information

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BAC

Clone NameMSMg01-436O16
Chromosome5 (Build37)
Map Location 83,254,366 - 83,254,574
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436O16.T7 (MSMg01no436_o16.b1)MSMg01-436O16.TJ (MSMg01no436_o16.g1)
ACCAG527871AG527872
length933734
length of high quality
(start - end)
---209 (207 - 415)
definitionCHROMAT_FILE: MSMg01no436_o16.b1 PHD_FILE: MSMg01no436_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:07 2005CHROMAT_FILE: MSMg01no436_o16.g1 PHD_FILE: MSMg01no436_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCACTCTTTGCTNGAGGGAGGGGAGACAGAACTCATTCCAAAAACAGG
GAGNGNGGNNGGAGGTTTTTCCCCAAAACAGGAGGGGGGGAGGGAGGAGG
AGATGTCCGCGTCGGTAAAGGTGAGATTCTTTTGTCCCGCTTTGTTGTGT
GCGCTTTGGTGTAGCTGTTTTAGGTGTGGGACAGCTTCTGCGGGGGGGCT
GGTGCTCCGTGTTTGTTCGTCTGCCCGGAGACCGTGAGTTAACTAGACGT
CGCCAATGGACATTCTACTGATGATCATCGCGTGGCTGTCATCATGCCTG
TCTTTTTTGTAGGTCATCGGTTGTGCACTGTGCTACGGTGAGTTTGCGGA
AGGACACATTGGTGTATGAGGATGTATATACACACTTCTTTTCTTTTTTT
TAAACCTTTGCCTCATGGCTCCTTGCTTCGTCGGCTTGTTTCCTTACTCT
TCCCCTTCTATTTAACTTACCCATGCATACGTCATCTAAATATATATAAG
TTTAATCAATCCACCCCCACCGTCTGTACTCTACACTAATAACTTACACT
TTTACCTCCCTCTTTATCCTTACATCTTTTTTTTTATTGCTCTGTCACTT
GTTACATGTACGAATTCACTAGCAGCATCCTTCATTATCTTACATCATTT
CAGATTCATCTTCCACATAGACATCCACCTTGTTCACCAAATATCAATAT
TATTAAAATTTTTAAAAACCAACAGTATCTACATTTAGTACTTGTTATCA
ACATGTACCCACAATATAAAACAAAGGTTGTCCACGTCGGATTTTTTAGC
ACCACATTAATAACTTTTTGTCTCATACATTCATTACACCAGTCTCCCTT
ACCCAACAACATCCTTGACAAACTGACACTATTTCACTACCTTTGCCAAC
ACCCACAATTTCAACCACTACGTATATTCTCTG
GTTCGAGATATGTTAGGCCTGGGGGCGCCTGGCTTCGAAATCTAGGGAAC
TATAGAATTTCCCCGGAATCCTTCATTTTATTGAAATGAGAAACGTAGAA
AGACTTCTGGTCCCTTCTCAGGAAAACATGACGTGGCTTAGAGGTCTTTC
GTATACTAATGAGAATGTTCTAGAGAATATTGGAACGAGGTTTGGGGCTA
ATGGGATGTGTAACACACACTTCACAAGTCAGTAGGAAGTGTGTAAAACA
CTTGTCAGATTTATTTTATGTGAATATGCCACCTGCATGTGCTAAGTACC
CACGCCCCCTTTTTTTTAAGATTCCTGCTGTGGGTTTACTATGGATTGCC
AACCCTACCTTCAAGACCATTTACTAATTAATACTACACACATGTTCACA
TCTTATAGAGTTAAACTCATGGTATAAAAGTGCTAAAATTTAATATGACT
TCGGGGTTGCTAGTCCAATTATTTGTGACCGATTATGTAACATCATAGCA
TCATAGTGTGGCGCTTATTTAATCTCCTGATGTCCTTTTGAGGACCTTTA
TGACATNCCCTATTTACTCCGGTCCCTACCCTGTTATGCTGCATGTTGGA
CTATTTTATGCCCTGTCCTCTGATGAGTACATCTCTATTTTTGTTTTTCC
TAAAGAATTCCTTTACTATTTCTCCCCCCCCTTTCGTATTTGCTTTGTCC
CCCTTCCTCTTATTCTCTTACTTTCCCCAACGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_o16.g1 MSMg01no436_o16.g1 CHROMAT_FILE:
MSMg01no436_o16.g1 PHD_FILE: MSMg01no436_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:07 2005
         (209 letters)



>mm_chr5_83254272_83254880
          Length = 609

 Score =  333 bits (172), Expect = 6e-96
 Identities = 199/216 (92%), Gaps = 14/216 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtaacacacacttcacaagtcagtaggaagtgtgtaaaacacttgtcagatttattt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 303 tgtgtaacacacacttcacaagtcagtaggaagtgtggaaaacacttgtcagatttattt 244

                                                                       
Query: 61  tatgtgaatatgccacctgcatgtgctaagtacccacgccccc-------ttttttttaa 113
           |||||||||||||||||||||||||||||||||||||||||||              |||
Sbjct: 243 tatgtgaatatgccacctgcatgtgctaagtacccacgcccccaccaaag-------taa 191

                                                                       
Query: 114 gattcctgctgtgggtttactatggattgccaaccctaccttcaagaccatttactaatt 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gattcctgctgtgggtttactatggattgccaaccctaccttcaagaccatttactaatt 131

                                               
Query: 174 aatactacacacatgttcacatcttatagagttaaa 209
           || ||||||||||||||||||||||| |||||||||
Sbjct: 130 aaaactacacacatgttcacatcttaaagagttaaa 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)