Query= MSMg01no437_a20.b1 MSMg01no437_a20.b1 CHROMAT_FILE:
MSMg01no437_a20.b1 PHD_FILE: MSMg01no437_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:18 2005
(535 letters)
>mm_chr5_108698535_108699469
Length = 935
Score = 992 bits (513), Expect = 0.0
Identities = 528/533 (99%), Gaps = 4/533 (0%)
Strand = Plus / Plus
Query: 5 cggaattcattcaccttatatcttctgaagccaacgagatttgtaacaagtcagaaaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cggaattcattcaccttatatcttctgaagccaacgagatttgtaacaagtcagaaaaga 264
Query: 65 agacaatttcaccagagcatgttatacaaggtaagcgatttgtgtgggatttggtttcga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacaatttcaccagagcatgttatacaaggtaagcgatttgtgtgggatttggtttcga 324
Query: 125 tgaagg-tccagaggaacagtcaagctaatagagtaaccacttggcgtcacagagccttc 183
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaaggatc-aggggaacagtcaagctaatagagtaaccacttggcgtcacagagccttc 383
Query: 184 attccacttcactagtaagcacagttaatgaaaagtcaaaacggcatagagacagcttgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attccacttcactagtaagcacagttaatgaaaagtcaaaacggcatagagacagcttgt 443
Query: 244 accttaagaaaacacctatgtagcattcttctgacattgttttcatccggctagtgcaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 accttaagaaaacacctatgtagcattcttctgacattgttttcatccggctagtgcaaa 503
Query: 304 taaggagtgcagacattagggtcaacaag-catccgcaacccctcactagtacagtttcc 362
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 504 taaggagtgcagacattagggtcaaca-gacatccgcaacccctcactagtacagtttcc 562
Query: 363 aatcaggtcttaaaacaacaagaattgactgcccacagctaaacgtggataataacaact 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatcaggtcttaaaacaacaagaattgactgcccacagctaaacgtggataataacaact 622
Query: 423 gagaaaggaaactcaaagttctctcttggaaagttaaattttagaacttcgagcatgagt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gagaaaggaaactcaaagttctctcttggaaagttaaattttagaacttcgagcatgagt 682
Query: 483 tgagtcagagagtacctctccctcacctgtatcgaggaaaagattcatttttg 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgagtcagagagtacctctccctcacctgtatcgaggaaaagattcatttttg 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_a20.g1 MSMg01no437_a20.g1 CHROMAT_FILE:
MSMg01no437_a20.g1 PHD_FILE: MSMg01no437_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:18 2005
(477 letters)
>mm_chr5_108831529_108832405
Length = 877
Score = 891 bits (461), Expect = 0.0
Identities = 473/477 (99%)
Strand = Plus / Minus
Query: 1 aggacactgtctctgggcagagagagagagttcaccctgtttctggggttctactaagct 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 677 aggacactgtctctgggcagagagagagagttcaccctgttcctggggttctactaagct 618
Query: 61 cacctaacctctgattcctaagaaatcttccaagttttccaaatagcccctacaaagttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cacctaacctctgattcctaagaaatcttccaagttttccaaatagcccctacaaagttc 558
Query: 121 tagagcacctgtcttcttttgggcaaagttggcctcctgtatgctcaaatctgccccact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tagagcacctgtcttcttttgggcaaagttggcctcctgtatgctcaaatctgccccact 498
Query: 181 gcccctaccctcagaacttctagcccaggtgactatctccttcttccagcacctccaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 497 gcccctaccctcagaacttctagcccaggtgactatctccttcttccagtgcctccaaac 438
Query: 241 ctgctgcacactcttcctggataattatgactgcatgaaggatggactctgttgtgtttg 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 437 ctgctgcacactcttcctggataactatgactgcatgaaggatggactctgttgtgtttg 378
Query: 301 gtagcttgttatgagacactattaccaagacaaattggctggggagctgaagttgagagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtagcttgttatgagacactattaccaagacaaattggctggggagctgaagttgagagt 318
Query: 361 ttcctatttcttgggatctatccaccaaccctacacttgaactctgctccaccataagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttcctatttcttgggatctatccaccaaccctacacttgaactctgctccaccataagac 258
Query: 421 tttgtgacatggtgagtttgcccatctctgatctcagggaggattcaaggagggctc 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttgtgacatggtgagtttgcccatctctgatctcagggaggattcaaggagggctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
