Query= MSMg01no437_f03.b1 MSMg01no437_f03.b1 CHROMAT_FILE:
MSMg01no437_f03.b1 PHD_FILE: MSMg01no437_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:40 2005
(486 letters)
>mm_chr5_138428003_138428888
Length = 886
Score = 917 bits (474), Expect = 0.0
Identities = 480/482 (99%)
Strand = Plus / Plus
Query: 1 cataagttcactagataagatgatgtaaaaaatacttcaaatctgagtgcttacctacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataagttcactagataagatgatgtaaaaaatacttcaaatctgagtgcttacctacat 260
Query: 61 ggcaagaggtcctgggttcagttcccagcactgcataaaactgggtactgtgtcacatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaagaggtcctgggttcagttcccagcactgcataaaactgggtactgtgtcacatac 320
Query: 121 ccataatcctagcactagagagatgaagagggtcagaagttcgaagtcatcattcgtacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccataatcctagcactagagagatgaagagggtcagaagttcgaagtcatcattcgtacc 380
Query: 181 taggatctgaggctattgcatgagaccctgttagacagaaaaagacttggaatctatcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggatctgaggctattgcatgagaccctgttagacagaaaaagacttggaatctatcca 440
Query: 241 caacttatgaaattctccaactataaagaatgtgttccctctcagagtggcctgaaacgc 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 caacttatgaaattctccaactatgaagaatgtgttccctctcagagtggcctgaaacgc 500
Query: 301 ccagccaagtagtttcctcctctgctgtgtgcctggctagcaacttgcttgccaagataa 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ccagccaagtagtttcctcctctgctgtgtgcctggctagcaacttgtttgccaagataa 560
Query: 361 agaattgagtgtttagatgccccaagcataaaggaattgaaagttgctcagctggagttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaattgagtgtttagatgccccaagcataaaggaattgaaagttgctcagctggagttg 620
Query: 421 gcatccatctgactgactttcctgtgggatccgggaggcttcagggtctcacacctttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatccatctgactgactttcctgtgggatccgggaggcttcagggtctcacacctttca 680
Query: 481 gg 482
||
Sbjct: 681 gg 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_f03.g1 MSMg01no437_f03.g1 CHROMAT_FILE:
MSMg01no437_f03.g1 PHD_FILE: MSMg01no437_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:40 2005
(343 letters)
>mm_chr5_138611609_138612351
Length = 743
Score = 565 bits (292), Expect = e-165
Identities = 329/356 (92%), Gaps = 25/356 (7%)
Strand = Plus / Minus
Query: 1 tcttgggaaggttgggtaagactcttgtagctgcccgaagacctatattcttctctgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcttgggaaggttgggtaagactcttgtagctgcccgaagacctatattcttctctgtgt 385
Query: 61 aaaaacggacttgtgaaaaggaacactgcctactttggggagaacttggtcgatttgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaaacggacttgtgaaaaggaacactgcctactttggggagaacttggtcgatttgttt 325
Query: 121 tcaatgttcatttaactaactagttcataggtttcgtcttaagtgaaagtgggtttctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcaatgttcatttaactaactagttcataggtttcgtcttaagtgaaagtgggtttctta 265
Query: 181 ggtttctgttaagagtttgaaataaagaatctaaaaggaaggttgattgtttattttatt 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 ggtttctgttaagagtttgaaataaagaatctaaaaggaaagttgattgtttattttatt 205
Query: 241 tattgtta-----tttt--------attgtgtgtgtgagatcgcacgggcatatcatagc 287
|||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 204 tatttttacattattttgttacattattgtgtgtgtgagatcgcacgggcatatcatag- 146
Query: 288 ttacaactgggtgctggacacccgcaggactctgttctcttccaacctgtgggtgg 343
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 -----------tgctggacacccgcaggactctgttctcttccaacctgtgggtgg 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
