Query= MSMg01no437_j13.b1 MSMg01no437_j13.b1 CHROMAT_FILE:
MSMg01no437_j13.b1 PHD_FILE: MSMg01no437_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:02 2005
(537 letters)
>mm_chr5_147909523_147910458
Length = 936
Score = 851 bits (440), Expect = 0.0
Identities = 467/476 (98%), Gaps = 3/476 (0%)
Strand = Plus / Minus
Query: 1 tgccacccacagcttctaaggagccagcggtgatgagtagtttagtggcacggtcttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgccacccacagcttctaaggagccagcggtgatgagtagtttagtggcacggtcttgtg 415
Query: 61 tatctgtaaacaagacacagtactggctcttcatgatttactgtctaaggacacagatga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gatctgtaaacaagacacagtactggctcttcatgatttactgtctaaggacacagatga 355
Query: 121 agaaattcaggatatctgaatttaatttcagaaaaccattcgattgtgtgggggcacctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 354 agaaattcaggatatctgaatttaatttcagaaaaccattcgattgtgtgggagcacctg 295
Query: 181 ccaacatccaaggaagaaagtctacattgcagaggtttggaaaacaaggtaaaactcaac 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 294 ccaacatccaaggaagaaagtctacattgcagaggtttggaaaac-aggtaaaactcaac 236
Query: 241 tggaacactgttgcagttatatataagattaaggtctgggtgtgatgacctgtgtctgag 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tggaacactggggcagttatatataagattaaggtctgggtgtgatgacctgtgtctgag 176
Query: 301 gccctagcattcaagagcttgagagaggaaggttcggtgca-ggcagtgtgaggccagcc 359
||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 175 gccctagcattcaggagcttgagagaggaaggttcggtgcacgg-agtgtgaggccagcc 117
Query: 360 tgggacacacaatggcactctgcctaaagccatgacaaaggatgagtggagttctgggaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tgggacacacaatggcactctgcctaaagccatgacaaaggatgagtggagttctgggaa 57
Query: 420 tgagctttgagctgatggaggtggtgcactcctgtaacctcagaaggtgacaggag 475
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 tgagctttgagctgacggaggtggtgcactcctgtaacctcagaaggtgacaggag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_j13.g1 MSMg01no437_j13.g1 CHROMAT_FILE:
MSMg01no437_j13.g1 PHD_FILE: MSMg01no437_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:02 2005
(532 letters)
>mm_chr5_147755149_147756079
Length = 931
Score = 959 bits (496), Expect = 0.0
Identities = 523/532 (98%), Gaps = 1/532 (0%)
Strand = Plus / Plus
Query: 1 aggacctctggaagagcagttagtgctcttaaccactgagccatctctccagccctagat 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggacctctggaagagcagtcagtgctcttaaccactgagccatctctccagccctagat 260
Query: 61 tttttttttcttgaaccattgtcttctaactctgtgatttacttagcaccatccatccat 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttttt-cttgaaccattgtcttctaactctgtgatttacttagcaccatccatccat 319
Query: 121 ttcttaccagcacgcaagaacccactgtcagtaactgttgacagacacgatattttgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttcttaccagcacgcaagaacccactgtcagtaactgttgacagacacgatattttgtga 379
Query: 181 ttgacacgcagatcacagaaacggtggcgatgagagttaacttctcagaacccttcccct 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 ttgacacgcagatcacagaaacggtggcgatgagagttaacttctcagagcccttcccct 439
Query: 241 cagccatatgctctgctctgggctttatgtgggttagtggagcctcgctacctgtgaggt 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagccacatgctctgctctgggctttatgtgggttagtggagcctcgctacctgtgaggt 499
Query: 301 agccaaagtacagagatcaagtggctcacggagatgtcttacaaagcttgaaaccactgt 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 500 agccaaagtacagagatcaagtggctcactgagatgtcttacaaagcttgaaaccactgt 559
Query: 361 ggggggactgttgacctgggtactcactactcttcagatgagccagtacggggtaggggc 420
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct: 560 ggggggactgttgacctgggtacccgctactcttcagatgagccagtacggggtagggac 619
Query: 421 tgtgcttgagtcacatgcaggtagtggcaattggagccaccccaaactctttctacctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtgcttgagtcacatgcaggtagtggcaattggagccaccccaaactctttctacctta 679
Query: 481 ccccctggctcagaaaagaaagatcatattgctggacgtggtggctcacccc 532
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 ccccctggctcagaaaagaaagaacatattgctggacgtggtggctcacccc 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 931
Length adjustment: 10
Effective length of query: 522
Effective length of database: 921
Effective search space: 480762
Effective search space used: 480762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
