XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
GGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAA
CATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGA
CTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAA
GTATTAGCCAGAGCAATTCAACAACAAAAGGAGATCAAGGGGATACAAAT
TGGACAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTAT
ATATAAGTGAAACTAATAATTCCACCAGAGAACTCCTAATCCTGATAAAC
AGCTTTGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGC
CTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAA
CACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTA
ACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTATGAAGAA
AGAAATTAAAACAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGA
TTGACAGGATCAACATTGTAAAAAATGGTTATCTTTGCCAAAAGCAATCT
TACGGATTCAATGCTATCCCCCATCAAAATTTCCAACTAAAATTATTCCA
CCGAATTATAAGGGAGCTAATTTGCACATTTCACCTTGAGAATAACTATT
AAACCCTTAGGATAGGCTTTAATTTCTTCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAAAAAATCCAGGTTTTGTGCACAGTCCACC
AAAATGACAACTCTACAAGATAACCAACTTTATTTTAGTTACTGCCTTAC
AAAGTATTACATCTGTCCTTAAAACAATCTTCTCCTTCCTATACAAATCA
TACATGAGATGCTTAAGAGCCATGGCTTTTCATTGTTCTTTCTTCCAAAC
TTCTAGATTGTAAGCTGGTTGTTTTGGCTCAGAGAGTAGACCATTTTTCG
TCTTTATTTTCACACGGATCTTGAATCATTTGATTGTTCTTTTTCTGACT
TAAAATTGTATTTACATGGTGTTTTTCATATACAATGTAGCCTAGTTTGG
GGCATTTATACTTCCATATTTTTTCTTTATTGATTATCCTACAATGAACT
GAAATTATTGCTTTCTCTCATTTAACCCATTGCTGCTTAAAGGAAGTATA
TTCCTTAATGTTTTACTATTGAGTTTACTTTTCAGTATAAAGTATTTTTA
TAACTCTTCTTGTGATCCCTGTGTTGATTTGTGATTGATTATTTCTGTGT
TTCTTAACAACTGAATATGTACAACAAGCATATAAACCATTTTTCTCTTC
TATAAAGACTCTCTTATTGTAACTAAATCCACATTCCCTATGACTCTTGA
AAGAAGTCATGCTCATTAGTTTTTGAAAAAAATTAAATTTTCCAATTCCC
CTTCCCTAGGTCAT

Query= MSMg01no438_e11.g1 MSMg01no438_e11.g1 CHROMAT_FILE:
MSMg01no438_e11.g1 PHD_FILE: MSMg01no438_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:00 2005
         (532 letters)



>mm_chr5_59541736_59542668
          Length = 933

 Score =  837 bits (433), Expect = 0.0
 Identities = 499/531 (93%), Gaps = 19/531 (3%)
 Strand = Plus / Minus

                                                                       
Query: 20  tgcacagtccaccaaaatgacaactctacaagataaccaactttattttagttactgcct 79
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 tgcacagtcccccaaaatgacaactctacaagataaccaactttattttagttactgcct 874

                                                                       
Query: 80  tacaaagtattacatctgt-ccttaaaacaatcttctccttcctatacaaatcatacatg 138
             ||| ||||||||||||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct: 873 cgcaaggtattacatctgtccctt-aaacaatctactccttcctatacaaatcatacatg 815

                                                                       
Query: 139 agatgcttaagagccatggcttttcattgttctttcttccaaacttctagattgtaagct 198
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 agatgcttgagagccatggcttttcattgttctttcttccaaacttctagattgtaagct 755

                                                                       
Query: 199 g----------------gttgttttggctcagagagtagaccatttttcgtctttatttt 242
           |                 || ||||||||||||||||||||||||||| |||||||||||
Sbjct: 754 gttttttttttttttttttttttttggctcagagagtagaccattttttgtctttatttt 695

                                                                       
Query: 243 cacacggatcttgaatcatttgattg-ttctttttctgacttaaaattgtatttacatgg 301
           ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 694 cacacagatcttgaatcatttgattgtttttttttctgacttaaaattgtatttacatgg 635

                                                                       
Query: 302 tgtttttcatatacaatgtagcctagtttggggcatttatacttccatattttttcttta 361
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 634 tgtttttcatatacaatgtagcctagtttggggcacttatacttccatattttttcttta 575

                                                                       
Query: 362 ttgattatcctacaatgaactgaaattattgctttctctcatttaacccattgctgctta 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttgattatcctacaatgaactgaaattattgctttctctcatttaacccattgctgctta 515

                                                                       
Query: 422 aaggaagtatattccttaatgttttactattgagtttacttttcagtataaagtattttt 481
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaggaagtatatttcttaatgttttactattgagtttacttttcagtataaagtattttt 455

                                                              
Query: 482 ataactcttcttgtgatccctgtgttgatttgtgattgattatttctgtgt 532
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ataactcttcttgtgatccctgtgttgatttgtgattgattatttctgtgt 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space:   481806
Effective search space used:   481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)