ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATAAATCCGCGGAAT
TCAAGAGGAAATACTATGCTGGCATAAGCAAAGTTTTCTGAGTTTGAAAA
GTAGTGGAAATGATAGATATTATGTTGTGAAGGTTGAAAGATTTTAAAAT
GTCATTGATACATTCAAGGGAAAAAATGTGTCAAGTCAATTAGGAACAAG
ATCAGCAAATTCTGTGAAATCTGGTTTTATGAAAACCAAAAATTTTCTAT
GAGAGAATTCGATTATATTCATGTTTCACTCCCAAAGACGTTGAACTGAG
GAATGATTCGCAGGATTTGCCTTTTTTTTATAGTATAAAGGATATTCGCA
TAGATTTTTCACTGAATACTCACCTCTGCTAGATCTTGTTAAACACTGAC
TCCTATCACCGTATGATCCCCCCCCCCGTTTGAGAGACTTGAACTGCACC
ACTCTTACATCATTGTACAAGACCCTGAACACTAGTGTATCTTACCATCT
CCTTACCTAATACTCCTATGCCATACCTTGTAACTTTCAATCTTCCTTCT
CTCCCTTATTCTGCTTCTATAATTTACTCTCTACTTTCTTTCTCCCTTTT
TCTACCTAACTAAGTCCCTTGTATCGTCTGTCATCTTCTTTTTTCTTACT
ACTTTTTACTCTACTTTACTATTTTTATACTAACACTTTTTATCTGTTTT
CGGTTTCTCATTTTTTTTTTTTTCATCTCCCACCTAACTATTTATTATAT
CTCTTACACTCCTTATCTCTTTTTTN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCCTAGGAGTGCAGAAGACTCCTAAGTCA
GAGGACAAGATGAAGTGAGATCTATGACCACACATTTGAAAGACCCTCTG
CTGTAAAGCTAAGCCCCATAAACCAAAACAAAAATAACTGGAGAAGAAAC
AAGACAGATAGTTTTATGTTATTTTTTCGGGGTCTTTTATAACATCAGAG
GTACCAAGGTCATTTTGTCACACTCTTAGTCCTTGACTCTCTTTTTATCA
GTCATTATGATTTAGAAGCACGAATATATACATCGTTATTATTTTTGATT
ATCGGAAAGAAAAACAAAGTAGACTTTTTCAAACTTATTTAATCAGAAAA
AATGAGCTGACCTCCAAATAAGATGAAAAGTTAGGAAAAAATGCTCAAAG
TACTGTAATTTCCTTATGTTCATTTTTGTAATGTTTTTATGTTTTATAAA
TACATGTATAAAATATAATAAAGTTTCCTTCTGTTGATATTAAATTTCTT
GTGCCTGTGTGAGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGNTTNTTT
TTNNTTTTTTNTTTTTTTTTTTTTTGGTTTGCTTTTTTTGGCNGTCTTTT
CTTTCTTGTCTTTTTCTTCTTCTCCGTTCTTTTCTCTCTTTCTTTTTCTT
CCCGCCTTTTTCTTTCCTCCGTTTCCTCTCCTCTTCCTTCCCTT

Query= MSMg01no438_i02.b1 MSMg01no438_i02.b1 CHROMAT_FILE:
MSMg01no438_i02.b1 PHD_FILE: MSMg01no438_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:18 2005
         (208 letters)



>mm_chr5_83492001_83492608
          Length = 608

 Score =  387 bits (200), Expect = e-112
 Identities = 206/208 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctggcataagcaaagttttctgagtttgaaaagtagtggaaatgatagatattatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgctggcataagcaaagttttctgagtttgaaaagtagtggaaatgatagatattatgtt 349

                                                                       
Query: 61  gtgaaggttgaaagattttaaaatgtcattgatacattcaagggaaaaaatgtgtcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gtgaaggttgaaagattttaaaatgtcattgatacattcaagggaaaaaatgtgtcaagt 289

                                                                       
Query: 121 caattaggaacaagatcagcaaattctgtgaaatctggttttatgaaaaccaaaaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 caattaggaacaagatcagcaaattctgtgaaatctggttttatgaaaaccaaaaatttt 229

                                       
Query: 181 ctatgagagaattcgattatattcatgt 208
           |||||||||||||  |||||||||||||
Sbjct: 228 ctatgagagaatttaattatattcatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no438_i02.g1 MSMg01no438_i02.g1 CHROMAT_FILE:
MSMg01no438_i02.g1 PHD_FILE: MSMg01no438_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:18 2005
         (520 letters)



>mm_chr5_83328477_83329396
          Length = 920

 Score =  990 bits (512), Expect = 0.0
 Identities = 518/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcctaggagtgcagaagactcctaagtcagaggacaagatgaagtgagatctatgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcctaggagtgcagaagactcctaagtcagaggacaagatgaagtgagatctatgacc 260

                                                                       
Query: 61  acacatttgaaagaccctctgctgtaaagctaagccccataaaccaaaacaaaaataact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacatttgaaagaccctctgctgtaaagctaagccccataaaccaaaacaaaaataact 320

                                                                       
Query: 121 ggagaagaaacaagacagatagttttatgttattttttcggggtcttttataacatcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagaagaaacaagacagatagttttatgttattttttcggggtcttttataacatcaga 380

                                                                       
Query: 181 ggtaccaaggtcattttgtcacactcttagtccttgactctctttttatcagtcattatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtaccaaggtcattttgtcacactcttagtccttgactctctttttatcagtcattatg 440

                                                                       
Query: 241 atttagaagcacgaatatatacatcgttattatttttgattatcggaaagaaaaacaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttagaagcacgaatatatacatcgttattatttttgattatcggaaagaaaaacaaag 500

                                                                       
Query: 301 tagactttttcaaacttatttaatcagaaaaaatgagctgacctccaaataagatgaaaa 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaactttttcaaacttatttaatcagaaaaaatgagctgacctccaaataagatgaaaa 560

                                                                       
Query: 361 gttaggaaaaaatgctcaaagtactgtaatttccttatgttcatttttgtaatgttttta 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 gttaggaaaaaatgctcaaagtactgtaatttccttttgttcatttttgtaatgttttta 620

                                                                       
Query: 421 tgttttataaatacatgtataaaatataataaagtttccttctgttgatattaaatttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttttataaatacatgtataaaatataataaagtttccttctgttgatattaaatttct 680

                                                   
Query: 481 tgtgcctgtgtgagtgtgtgtctgtgtgtgtgtgtgtgtg 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgcctgtgtgagtgtgtgtctgtgtgtgtgtgtgtgtg 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)