Query= MSMg01no438_i16.b1 MSMg01no438_i16.b1 CHROMAT_FILE:
MSMg01no438_i16.b1 PHD_FILE: MSMg01no438_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:21 2005
(496 letters)
>mm_chr5_151911717_151912616
Length = 900
Score = 868 bits (449), Expect = 0.0
Identities = 485/499 (97%), Gaps = 5/499 (1%)
Strand = Plus / Plus
Query: 3 gaattctcttgtttttacatt-aatttaactttggtatttttgaagcaggggcttgctgt 61
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctcttgtttttaaatttaatttaactttggtatttttgaagcaggggcttgctgt 261
Query: 62 gaagcccaggctggccttgaattcattatgcagctcaaacttgcaatcctcctgtctctg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaagcccaggctggccttgaattcattatgcagctcaaacttgcaatcctcctgtctctg 321
Query: 122 cttccagaatgcatatgacctcttaaatgttacaaagctcctcttctttggcaagtgtgg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttccagaatgcatatgacctcttaaatgttacaaagctcctcttctttggcaagtgtgg 381
Query: 182 tttccatttacattctaagctatatattattgtgtattccataatggcatttctttcata 241
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 382 tttccatttacattctaagctatatattattgtgtattccataatggcacttctttcata 441
Query: 242 aaatgatcacagcaccagccagtttagaatattctatttgaagaataaaaagaacacaca 301
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 442 aaatgatcacagcaccagccagtttagaatattctaaatgaagaataaaaagaacacaca 501
Query: 302 ctctctcaggtttaccacattgtagatttttaaaaattcatccctggcatgacggcttct 361
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 502 ctctctcaggtttaccacattgtagattttaaaaaattcatccctggcatgatggcttct 561
Query: 362 attagcaaaagccagagtccacctaactattggtggcttttgtcagaaccttcccaagaa 421
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 562 attagcgaaagccagagtccacctaactatcggtggcttttgtcagaaccttcccaagaa 621
Query: 422 gccacttcagcttttctcttagggtgtac----ggctccctgtttcccggcagcttctga 477
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 622 gccacttcagcttttctcttagggtgtacaaggggctccctgtttcccggcagcttctga 681
Query: 478 gatgtcagtttgggtcatc 496
|||| ||||||||||||||
Sbjct: 682 gatggcagtttgggtcatc 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 900
Length adjustment: 10
Effective length of query: 486
Effective length of database: 890
Effective search space: 432540
Effective search space used: 432540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_i16.g1 MSMg01no438_i16.g1 CHROMAT_FILE:
MSMg01no438_i16.g1 PHD_FILE: MSMg01no438_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:21 2005
(243 letters)
>mm_chr5_152096430_152097072
Length = 643
Score = 424 bits (219), Expect = e-123
Identities = 237/243 (97%)
Strand = Plus / Minus
Query: 1 ccaagacgcttggcccagaggctcctcagtcacaacagaagttcatgttgggcaccatat 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 443 ccaagatgcttggcccagaggctcctcagtcacaacagaagttcatgttgggcactatat 384
Query: 61 atatgattgctttagaattaacacacggtacacttattctcacaaccatcttttttatat 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 atatgattgctttagaattaacatacggtacacttattctcacaaccatcttttttatat 324
Query: 121 tagaaattcatcttcttataacaaccttcagaggttattgcatcagttaccacagtttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tagaaattcatcttcttataacaaccttcagaggttattgcatcagttaccacagtttta 264
Query: 181 aatgtctcccagatatttaaaccgtagcataggcttagatttttctaaccctactttgct 240
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct: 263 aatgtctcccagatatttaaactgtagcataggcttagatttttctaaacctactttgtt 204
Query: 241 tag 243
|||
Sbjct: 203 tag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
