Query= MSMg01no438_o12.b1 MSMg01no438_o12.b1 CHROMAT_FILE:
MSMg01no438_o12.b1 PHD_FILE: MSMg01no438_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:51 2005
(562 letters)
>mm_chr5_62753364_62754324
Length = 961
Score = 1017 bits (526), Expect = 0.0
Identities = 553/562 (98%), Gaps = 1/562 (0%)
Strand = Plus / Minus
Query: 1 tttaaaacccttgacaatatgccatttggtttttgtgtgattgactttttcatgtcagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tttaaaacccttgacaatatgccatttggtttttgtgtgattgactttttcatgtcagat 702
Query: 61 cccaaattcaatttcatatgccatctttaattatcctttttaaggtactcttctgtcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 cccaaattcaatttcatatgccatctttaattatcctttttaaggtactcttctgtcttc 642
Query: 121 caattaacatacaataagtttatgtaaaaggatgactagatcgactggcaatagaaaaat 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 caattaacatacaatacgtttatgtaaaaggatgactagatcgactggcaatagaaaaat 582
Query: 181 tagttttcaaagcagccttaatagcaatacctgtattacagtgacattcagcatttcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tagttttcaaagcagccttaatagcaatacctgtattacagtgacattcagcatttcagt 522
Query: 241 tgtgctatttcattactgtttgtaactctcttttcaagctttacctcattataagcttat 300
||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 521 tgtactaactcactactgtttgtaactctgttttcaagctttacctcattataagcttat 462
Query: 301 aaatcttagactttcttctacttaacttttccaaaaattgatgcacgtcttggttggcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaatcttagactttcttctacttaacttttccaaaaattgatgcacgtcttggttggcta 402
Query: 361 taaagctgcatcatctatttcatgtgacttaggcaacgctagttctcagtctcctcttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 taaagctgcatcatctatttcatgtgacttaggcaacgctagttctcagtctcctcttaa 342
Query: 421 ggttaggttacctgacccaggatcaacgctggctgtattgtacactctgatcaatgtgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggttaggttacctgacccaggatcaacgctggctgtattgtacactctgatcaatgtgat 282
Query: 481 aagtatgtgggaccaaacaaagtagcatcactgtcccaatccttttgatgcactggaata 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 281 aagtatgtgggaccaaacaaagtagcatcagtgtcccaatccttttgatgcactggaata 222
Query: 541 taactcatattttttattggta 562
||||||||| || |||||||||
Sbjct: 221 taactcata-ttattattggta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 961
Length adjustment: 10
Effective length of query: 552
Effective length of database: 951
Effective search space: 524952
Effective search space used: 524952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_o12.g1 MSMg01no438_o12.g1 CHROMAT_FILE:
MSMg01no438_o12.g1 PHD_FILE: MSMg01no438_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:51 2005
(524 letters)
>mm_chr5_62573552_62574475
Length = 924
Score = 919 bits (475), Expect = 0.0
Identities = 509/525 (96%), Gaps = 10/525 (1%)
Strand = Plus / Plus
Query: 1 tttcatttcttaaacaaaagttgtatctataaataaaattcacagatgcacaaggctctc 60
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 201 tttcatttcttaaacaaaagttgtatctacaaataaaattcacagatgtacaaggctctc 260
Query: 61 aaagagaca-tgaatgttgcaaaggactgtgtaactttatggtcaattatgctcctcaca 119
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagaga-actgaatgttgcaaaggactgtgtaactttatggtcaattatgctcctcaca 319
Query: 120 gcaatctctgtaagtggaacttaattcgtctttatgatttgttttaaactgagagctggc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcaatctctgtaagtggaacttaattcgtctttatgatttgttttaaactgagagctggc 379
Query: 180 caacctgtatcacaattgaactcatcaactacatggtcttatatgcaagttcacataaag 239
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 caacctgtatcacaattgaact--------acatggtcttatatgcaagttcacataaag 431
Query: 240 atatcaaaaagatcaaatatcaacagtcttaatggaaaaagacttattgggatgcatttc 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atatcaaaaagatcaaatatcgacagtcttaatggaaaaagacttattgggatgcatttc 491
Query: 300 tgtatatcttcaattatatatacatatataatggtttgtatgttaaatttatatttcatg 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 492 tgtatatcttcaattatatatacatatataatagtttgtatgttaaatttatatttcatg 551
Query: 360 ctgatttttcactttacaaacttgaaaacaagagaaatatttagctacttagtcaatgcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctgatttttcactttacaaacttgaaaacaagagaaatatttagctacttagtcaatgcc 611
Query: 420 tcttcaaaagtgcaagatattcataagaggtacaaagtcactcttcctgaagtaaaactc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tcttcaaaagtgcaagatattcataagaggtacaaagtcactcttcctgaagtaaaactc 671
Query: 480 agggataaaaatattatgaaaaatatcttataaatataaagaagt 524
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 672 agggataaaaatattatgaaaaatatcttataaatatatagaagt 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
