BAC Information

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BAC

Clone NameMSMg01-439A03
Chromosome5 (Build37)
Map Location 110,794,726 - 110,795,234
singlet/doubletsinglet
Overlap gene2410025L10Rik
Upstream geneEG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679
Downstream geneGalnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439A03.T7 (MSMg01no439_a03.b1)MSMg01-439A03.TJ (MSMg01no439_a03.g1)
ACCAG529467AG529468
length732802
length of high quality
(start - end)		518 (49 - 566)65 (69 - 133)
definitionCHROMAT_FILE: MSMg01no439_a03.b1 PHD_FILE: MSMg01no439_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:00 2005CHROMAT_FILE: MSMg01no439_a03.g1 PHD_FILE: MSMg01no439_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNTTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTCTTTCCTCTGTCTCTGCCTGTGTAGGCCGTAGGTTCCAC
CCCCTCCTATACCCAGCCGTACTGACTAAAGTGTCTTTCTAAGGTAAAGG
GTGGAACGAGAAAACCCAAAGTTTTGTACATTATTATTAATTACTATTTT
AATATATATCTGTAATGTCGGCTCCAAGTACCAAGGGAAGGCCAGAGCTG
GGCCTGAGTTCGGAGCCTCACAGTGCGCTGGACAGAAAGACCATTTCTTT
CCATAAATAAGACAAACCCTGGGGCTCAAATGGGATCTGAGAAGTTAAAC
TGCAAATCCCAACTTAAAAAAAAAAAATTTTTTTTTGTTCTTTAAAATGT
CGTTAGAGCACAAAATTAAGAAAAATACAAAACCATTAAAAATGCTTTTG
TCACTTGTGAAGGGGGAAAAGATACAAAGCTAAATTTTACAAAGCTAAAT
TCTTTCTGGATGGAACGAGCCCTGGTTAGGGTCGGTCAGGACTGAGCTCG
CCCTGCACAGAAATGTGCTTTGTTGCCATCTTAGCTTGTGAATGGAAGCA
ACCGTGTGACCTTGCCACCATCTTGGTAAATGTAACCCGGNTGGTACCAA
CAAAAACCCGCAGCATCCATAAAACTCCTTGGGACTGGCTGGGCCTCTGG
AAAAAACTAAAACCCCTTTATGAAAAAAAAAA

TGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTCTCTCGTTGGGGCACATGCCATCAGGTTC
TATTCCAAACTCACTGTATTGGTTACTTTCCTCTAAGNGTACTGGACAAA
AGAAACTTAANGACGAATGNTTTNTGATTCAATTTTGGAGGGTACAAAAC
AATTCTTTCACAAAGGAAAAGGAGGGCGGACGGNNNNNGGAGAATCTTGG
GTAAAACTAAGNCAGGGGGCGAAGGGCGGGGGAATCGGGTAGGTGGCGGG
CGAGCGCAAAATTTGCTTTTTTTTTAGGGGAGGGGCGGCGGGGGGGGGGG
GTTCCTTTTTTAAAAAANTTTATTCAAAAATTTTTTTCAAATAAAAANNT
GNNTAAAAAATTTTTTGGGGAGGGGGGGGGGGCGCGGGGGGGAAAAAAAA
ATATTTTTTCTCTTTTTAAAAAATTTTTATAAAAAAAAAAAAATGGGGNN
TTTTAATTTTCTTTTTAAAAANNAAAAAAAAAAATAATTTTGTGGGTTTG
ATTTTTTATTTTANTNTCTNANAAATTATTTTTTTTAATTATTTTTATAA
ATATTTTTTTAATTTATAATTAAAAGAATAAATAATTTANNNTTTTTAAT
TTATTTATTTTTTTTTTTTNTTAAAAATATTTNTNNNTTTTTTTTATTTA
TATTTATTAAATATTTTATTATTTTAANTTTATTATTATTTTTTTTTTTA
NTTTATTTATTATTATTTTTTTTTTTTTGTTATTGGGGTGGGGGTGGGGT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_a03.b1 MSMg01no439_a03.b1 CHROMAT_FILE:
MSMg01no439_a03.b1 PHD_FILE: MSMg01no439_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:00 2005
         (518 letters)



>mm_chr5_110794518_110795435
          Length = 918

 Score =  948 bits (490), Expect = 0.0
 Identities = 505/510 (99%), Gaps = 1/510 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcactctttcctctgtctctgcctgtgtaggccgtaggttccaccccctcctatacccag 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcactctttcctctgtctctgcctgtgtaggccgtaggttccaccccctcctatacccag 268

                                                                       
Query: 69  ccgtactgactaaagtgtctttctaaggtaaagggtggaacgagaaaacccaaagttttg 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ccgtactgactaaagtgtctttctaaggtaaagggtggaacgagaaaacccaaagttttg 328

                                                                       
Query: 129 tacattattattaattactattttaatatatatctgtaatgtcggctccaagtaccaagg 188
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 329 tacattattattaattactattttaatatatatctgtaacgtcggctccaagtaccaagg 388

                                                                       
Query: 189 gaaggccagagctgggcctgagttcggagcctcacagtgcgctggacagaaagaccattt 248
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaaggccagagccgggcctgagttcggagcctcacagtgcgctggacagaaagaccattt 448

                                                                       
Query: 249 ctttccataaataagacaaaccctggggctcaaatgggatctgagaagttaaactgcaaa 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctttccataaataagacaaaccctggggctcaaatgggatctgagaagttaaactgcaaa 508

                                                                       
Query: 309 tcccaacttaaaaaaaaaaaatttttttttgttctttaaaatgtcgttagagcacaaaat 368
           |||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||
Sbjct: 509 tcccaacttaaaaaaaaaat-tttttttttgttctttaaaatgtcgtcagagcacaaaat 567

                                                                       
Query: 369 taagaaaaatacaaaaccattaaaaatgcttttgtcacttgtgaagggggaaaagataca 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 taagaaaaatacaaaaccattaaaaatgcttttgtcacttgtgaagggggaaaagataca 627

                                                                       
Query: 429 aagctaaattttacaaagctaaattctttctggatggaacgagccctggttagggtcggt 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aagctaaattttacaaagctaaattctttctggatggaacgagccctggttagggtcggt 687

                                         
Query: 489 caggactgagctcgccctgcacagaaatgt 518
           ||||||||||||||||||||||||||||||
Sbjct: 688 caggactgagctcgccctgcacagaaatgt 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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